RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 GPN3Q9UHW5 284 aaPredicted RBP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 LAMP5Q9UJQ1 280 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 ZNF225Q9UK10 706 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 PCDHGB1Q9Y5G3 927 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 SVILO95425 2214 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 H0YIV9 168 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 RFXAPO00287 272 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 TPPPO94811 219 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 CHAF1BQ13112 559 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 ATXN7L3Q14CW9 347 aaPredicted RBP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 SF3B4Q15427 424 aaKnown RBP eCLIP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 BTBD16Q32M84 506 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 ZCCHC12Q6PEW1 402 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 RBM45Q8IUH3 476 aaKnown RBP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 PM20D2Q8IYS1 436 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 OR8J2Q8NGG1 315 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 RHNO1Q9BSD3 238 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 CENPOQ9BU64 300 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 SAP130Q9H0E3 1048 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 APOBEC3BQ9UH17 382 aaKnown RBP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 FXYD6-FXYD2A0A087WZ82 144 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 TRIM3O75382 744 aaPredicted RBP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 FBXO45P0C2W1 286 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 HIST1H1TP22492 207 aaPredicted RBP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 SLC6A9P48067 706 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 ALDH3B2P48448 385 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 PRDX1Q06830 199 aaKnown RBP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 ERV3-1Q14264 604 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 EOGTQ5NDL2 527 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 ZNF782Q6ZMW2 699 aaPredicted RBP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 CDS1Q92903 461 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 CCDC115Q96NT0 180 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 MCCC1Q96RQ3 725 aaPredicted RBP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 CTRCQ99895 268 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 AIFM2Q9BRQ8 373 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 FXYD6Q9H0Q3 95 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 IL37Q9NZH6 218 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 NUFIP1Q9UHK0 495 aaKnown RBP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 FARSAQ9Y285 508 aaKnown RBP11.04□□□□□ -0.64
SYNPO-204ENST00000519664 PCM1Q15154 2024 aa11.04□□□□□ -0.64
SYNPO-204ENST00000519664 OR2B3O76000 313 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 ZNF806P0C7X5 589 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 ADORA3P0DMS8 318 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 VAMP1P23763 118 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 TGFBR1P36897 503 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 P2RY2P41231 377 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 PITPNAQ00169 270 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 HHEXQ03014 270 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 RIPPLY1Q0D2K3 151 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 IRF4Q15306 451 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 CLPPQ16740 277 aaPredicted RBP11.03□□□□□ -0.64
SYNPO-204ENST00000519664 C1orf189Q5VU69 101 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 GPAT4Q86UL3 456 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 ZNF101Q8IZC7 436 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 PMM1Q92871 262 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 BCL7BQ9BQE9 202 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 APOOQ9BUR5 198 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 ACTRT3Q9BYD9 372 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 PLEKHM1Q9Y4G2 1056 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 A0A0A6YYC8 382 aaPredicted RBP11.03□□□□□ -0.64
SYNPO-204ENST00000519664 SH3D21A4FU49 640 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 SOBPA7XYQ1 873 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 I3L1I5 382 aaPredicted RBP11.03□□□□□ -0.64
SYNPO-204ENST00000519664 SGK494L7N484 410 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 RNF13O43567 381 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 RDH16O75452 317 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 PPP1R3DO95685 299 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 IGLV3-27P01718 113 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 HTR1AP08908 422 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 SPARCP09486 303 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 ZDHHC11BP0C7U3 371 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 GJA4P35212 333 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 ZNF91Q05481 1191 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 C18orf63Q68DL7 685 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 SFRP4Q6FHJ7 346 aaPredicted RBP11.03□□□□□ -0.64
SYNPO-204ENST00000519664 TANGO2Q6ICL3 276 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 LCTLQ6UWM7 567 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 FOXRED2Q8IWF2 684 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 CCDC36Q8IYA8 594 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 OR56A3Q8NH54 315 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 FAM83CQ9BQN1 747 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 GTPBP2Q9BX10 602 aaKnown RBP11.03□□□□□ -0.64
SYNPO-204ENST00000519664 PRRG4Q9BZD6 226 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 DDX31Q9H8H2 851 aaKnown RBP11.03□□□□□ -0.64
SYNPO-204ENST00000519664 MTHFD2LQ9H903 347 aaPredicted RBP11.03□□□□□ -0.64
SYNPO-204ENST00000519664 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.03□□□□□ -0.64
SYNPO-204ENST00000519664 PDCD5O14737 125 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 CDC40O60508 579 aaKnown RBP eCLIP11.03□□□□□ -0.64
SYNPO-204ENST00000519664 WNT4P56705 351 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 CTBSQ01459 385 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 ARFRP1Q13795 201 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 SLC29A4Q7RTT9 530 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 PIAS4Q8N2W9 510 aaPredicted RBP11.03□□□□□ -0.64
SYNPO-204ENST00000519664 OR2L5Q8NG80 312 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 ZNF431Q8TF32 576 aaPredicted RBP11.03□□□□□ -0.64
SYNPO-204ENST00000519664 RIT1Q92963 219 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 RFT1Q96AA3 541 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 RNF167Q9H6Y7 350 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 KLRF1Q9NZS2 232 aa11.03□□□□□ -0.64
SYNPO-204ENST00000519664 NDUFAF4Q9P032 175 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms