RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 C15orf38-AP3S2A0A0A6YYH1 394 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 GSAPA4D1B5 854 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 MBLAC1A4D2B0 266 aaPredicted RBP5.97□□□□□ -1.45
NUP54-215ENST00000514313 FAM74A7A6NL05 159 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 A8MXK9 166 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 EPM2AB3EWF7 344 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 CXCL11O14625 94 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 EFNA2O43921 213 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 OPN1MWP04001 364 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 OPN1MW2P0DN77 364 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 OPN1MW3P0DN78 364 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 XRCC1P18887 633 aaPredicted RBP5.97□□□□□ -1.45
NUP54-215ENST00000514313 MAGEA5P43359 124 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 TATDN3Q17R31 274 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 FAM74A3Q4VXF1 159 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 LRRC23Q53EV4 343 aaPredicted RBP5.97□□□□□ -1.45
NUP54-215ENST00000514313 CYBRD1Q53TN4 286 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 CELF3Q5SZQ8 465 aaKnown RBP5.97□□□□□ -1.45
NUP54-215ENST00000514313 RFWD3Q6PCD5 774 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 ZNF613Q6PF04 617 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 ANKRD37Q7Z713 158 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 PARGQ86W56 976 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 NPRL2Q8WTW4 380 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 RLN3Q8WXF3 142 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 CTNNBL1Q8WYA6 563 aaPredicted RBP5.97□□□□□ -1.45
NUP54-215ENST00000514313 C18orf25Q96B23 403 aaPredicted RBP5.97□□□□□ -1.45
NUP54-215ENST00000514313 C18orf12Q96KH6 178 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 ATF6BQ99941 703 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 CHCHD5Q9BSY4 110 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 TMEM121Q9BTD3 319 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 MCRIP2Q9BUT9 160 aaKnown RBP5.97□□□□□ -1.45
NUP54-215ENST00000514313 EDEM2Q9BV94 578 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 COMMD4Q9H0A8 199 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 ELOVL3Q9HB03 270 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 CTSZQ9UBR2 303 aa5.97□□□□□ -1.45
NUP54-215ENST00000514313 EIF3LQ9Y262 564 aaKnown RBP5.97□□□□□ -1.45
NUP54-215ENST00000514313 FOXI3A8MTJ6 420 aaPredicted RBP5.96□□□□□ -1.46
NUP54-215ENST00000514313 PPIHO43447 177 aaKnown RBP5.96□□□□□ -1.46
NUP54-215ENST00000514313 STX11O75558 287 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 JCHAINP01591 159 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 OPN1LWP04000 364 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 NT5EP21589 574 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 ETV5P41161 510 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 RPS6P62753 249 aaKnown RBP5.96□□□□□ -1.46
NUP54-215ENST00000514313 IRX1P78414 480 aaPredicted RBP5.96□□□□□ -1.46
NUP54-215ENST00000514313 ACY1Q03154 408 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 HYAL1Q12794 435 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 KLHL22Q53GT1 634 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 LANCL3Q6ZV70 420 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 ZCCHC7Q8N3Z6 543 aaKnown RBP5.96□□□□□ -1.46
NUP54-215ENST00000514313 FNDC8Q8TC99 324 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 RPL3LQ92901 407 aaKnown RBP5.96□□□□□ -1.46
NUP54-215ENST00000514313 TUBB1Q9H4B7 451 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 RCOR3Q9P2K3 495 aaPredicted RBP5.96□□□□□ -1.46
NUP54-215ENST00000514313 RNF14Q9UBS8 474 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 MUTYHQ9UIF7 546 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 ANAPC7Q9UJX3 599 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 SMC3Q9UQE7 1217 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 GSTK1Q9Y2Q3 226 aa5.96□□□□□ -1.46
NUP54-215ENST00000514313 IGHV3-16A0A0C4DH30 117 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 C11orf98E9PRG8 122 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 STX7O15400 261 aaKnown RBP5.95□□□□□ -1.46
NUP54-215ENST00000514313 DCXO43602 365 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 TYROBPO43914 113 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 GPRIN2O60269 458 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 IGHV3-9P01782 118 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 HNF1AP20823 631 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 PPT1P50897 306 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 CD300CQ08708 224 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 RIPK1Q13546 671 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 TMEM52BQ4KMG9 183 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 C14orf28Q4W4Y0 310 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 ZC2HC1BQ5TFG8 222 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 REP15Q6BDI9 236 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 EMBQ6PCB8 327 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 REG3GQ6UW15 175 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 HSD11B1LQ7Z5J1 315 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 KIAA1328Q86T90 577 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 ZNF679Q8IYX0 411 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 TBCKQ8TEA7 893 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 CRYGNQ8WXF5 182 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 PSKH2Q96QS6 385 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 NFKBIZQ9BYH8 718 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 TRIM9Q9C026 710 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 JPT2Q9H910 190 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 ABCC13Q9NSE7 274 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 TXLNGQ9NUQ3 528 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 HPCAL4Q9UM19 191 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 ASB3Q9Y575 518 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 KIF16BQ96L93 1317 aa5.95□□□□□ -1.46
NUP54-215ENST00000514313 ATP10DQ9P241 1426 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 IGHV3OR16-10A0A075B7F0 116 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 RPL37AP8A6NKH3 93 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 IGFBP1P08833 259 aaPredicted RBP5.94□□□□□ -1.46
NUP54-215ENST00000514313 CSRP3P50461 194 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 PLOD1Q02809 727 aaPredicted RBP5.94□□□□□ -1.46
NUP54-215ENST00000514313 ZIC1Q15915 447 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 C17orf58Q2M2W7 97 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 MS4A13Q5J8X5 152 aa5.94□□□□□ -1.46
NUP54-215ENST00000514313 C9orf66Q5T8R8 295 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms