RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 CCNJQ5T5M9 372 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 NANOGP8Q6NSW7 305 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 NUP54Q7Z3B4 507 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 GALNT10Q86SR1 603 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 GOLM1Q8NBJ4 401 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 CATSPER1Q8NEC5 780 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 OR10G3Q8NGC4 313 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 TMCO6Q96DC7 493 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 UBL7Q96S82 380 aaPredicted RBP13.4□□□□□ -0.26
BRCA1-223ENST00000494123 MFRPQ9BY79 579 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 TRIM8Q9BZR9 551 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 NANOGQ9H9S0 305 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 CSAG2Q9Y5P2 127 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 GMEB1Q9Y692 573 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 PIEZO2Q9H5I5 2752 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 CNTRLQ7Z7A1 2325 aa13.4□□□□□ -0.26
BRCA1-223ENST00000494123 C15orf38-AP3S2A0A0A6YYH1 394 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 TRAV17A0A0B4J275 112 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 FXYD1O00168 92 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 TSPAN2O60636 221 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 UGT2B11O75310 529 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 NEURL1O76050 574 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 P04436 131 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 ARHGAP11BQ3KRB8 267 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 GPAT3Q53EU6 434 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 ZNF766Q5HY98 468 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 SLC22A10Q63ZE4 541 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 HACD2Q6Y1H2 254 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 ARPINQ7Z6K5 226 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 PSD4Q8NDX1 1056 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 MDS2Q8NDY4 140 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 OR8J3Q8NGG0 315 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 HOPXQ9BPY8 73 aaPredicted RBP13.39□□□□□ -0.27
BRCA1-223ENST00000494123 IKZF5Q9H5V7 419 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 KLHL1Q9NR64 748 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 SACM1LQ9NTJ5 587 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 P2RX2Q9UBL9 471 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 LIPT1Q9Y234 373 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 CCT8L1PA6NM43 557 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 IGKV1D-16P01601 117 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 NR2F1P10589 423 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 GPX2P18283 190 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 CALB2P22676 271 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 SELPLGQ14242 412 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 ZNF169Q14929 603 aaPredicted RBP13.39□□□□□ -0.27
BRCA1-223ENST00000494123 CYP51A1Q16850 503 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.39□□□□□ -0.27
BRCA1-223ENST00000494123 RABL3Q5HYI8 236 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 GCNT6Q5T4J0 391 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 SLC25A25Q6KCM7 469 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 HEPHL1Q6MZM0 1159 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 MDGA2Q7Z553 956 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 RBMXL3Q8N7X1 1067 aaKnown RBP13.39□□□□□ -0.27
BRCA1-223ENST00000494123 TMEM178AQ8NBL3 297 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 CHDHQ8NE62 594 aaPredicted RBP13.39□□□□□ -0.27
BRCA1-223ENST00000494123 FAM110BQ8TC76 370 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 SDF2Q99470 211 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 ECSITQ9BQ95 431 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 METTL7AQ9H8H3 244 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 NDE1Q9NXR1 346 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 CNIH4Q9P003 139 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 B3GNT3Q9Y2A9 372 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 L3MBTL1Q9Y468 752 aa13.39□□□□□ -0.27
BRCA1-223ENST00000494123 SLC28A2O43868 658 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 STX11O75558 287 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 BCHEP06276 602 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 SP1P08047 785 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 CYP4B1P13584 511 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 GNA13Q14344 377 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 DESI1Q6ICB0 168 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 PCSK4Q6UW60 755 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 ZNF227Q86WZ6 799 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 TEX19Q8NA77 164 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 SPPL2AQ8TCT8 520 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 PAQR8Q8TEZ7 354 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 HGDQ93099 445 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 SECISBP2Q96T21 854 aaKnown RBP13.38□□□□□ -0.27
BRCA1-223ENST00000494123 FBXO34Q9NWN3 711 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 KLRF1Q9NZS2 232 aa13.38□□□□□ -0.27
BRCA1-223ENST00000494123 KLF13Q9Y2Y9 288 aaPredicted RBP13.38□□□□□ -0.27
BRCA1-223ENST00000494123 CHCHD2Q9Y6H1 151 aaPredicted RBP13.38□□□□□ -0.27
BRCA1-223ENST00000494123 ATMQ13315 3056 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 C5orf58C9J3I9 102 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 NME2P1O60361 137 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 ICOSLGO75144 302 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 TNFRSF21O75509 655 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 UBOX5O94941 541 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 UTS2O95399 124 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 NUDT7P0C024 238 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 CCL3P10147 92 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 HPGDP15428 266 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 NME2P22392 152 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 SLC6A2P23975 617 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 LCN1P31025 176 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 CLK3P49761 638 aaKnown RBP13.37□□□□□ -0.27
BRCA1-223ENST00000494123 PSME3P61289 254 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 SYPL1Q16563 259 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 FLYWCH1Q4VC44 716 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 PRAMEF20Q5VT98 475 aa13.37□□□□□ -0.27
BRCA1-223ENST00000494123 Q6ZS92 163 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms