RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 LOC105369274A0A096LPK9 316 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SGCEO43556 437 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MYF5P13349 255 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PFKLP17858 780 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RAB3BP20337 219 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PVALBP20472 110 aaPredicted RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 UGT2B10P36537 528 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RGS8P57771 180 aaPredicted RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TMEM196Q5HYL7 178 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR4N4Q8N0Y3 316 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR5M3Q8NGP4 307 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 UFD1Q92890 307 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 IFT22Q9H7X7 185 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HPF1Q9NWY4 346 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SPHK1Q9NYA1 384 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC25A37Q9NYZ2 338 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DNAJC27Q9NZQ0 273 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 KLHL21Q9UJP4 597 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 POFUT2Q9Y2G5 429 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PCDHA9Q9Y5H5 950 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC35F4A4IF30 521 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CPSF4LA6NMK7 179 aaKnown RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DISC1C4P0D8 188 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NARSO43776 548 aaKnown RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 KHDRBS3O75525 346 aaKnown RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ADH1BP00325 375 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C1QBP02746 253 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 THEGLP0DJG4 465 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HYAL1Q12794 435 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DUSP6Q16828 381 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MARCH9Q86YJ5 346 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LAX1Q8IWV1 398 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GRHL3Q8TE85 626 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TADA1Q96BN2 335 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PDLIM5Q96HC4 596 aaKnown RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF300Q96RE9 604 aaPredicted RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TBX5Q99593 518 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TSNAXQ99598 290 aaKnown RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GPN1Q9HCN4 374 aaPredicted RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLAMF7Q9NQ25 335 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TAS2R3Q9NYW6 316 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF282Q9UDV7 671 aaPredicted RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RPL36Q9Y3U8 105 aaKnown RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PCYT1BQ9Y5K3 369 aaPredicted RBP10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 A3GALT2U3KPV4 340 aa10.14□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SCAMP2O15127 329 aaKnown RBP10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SEMA4FO95754 770 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CFIP05156 583 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ADORA3P0DMS8 318 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 JUNDP17535 347 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DHPSP49366 369 aaPredicted RBP10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RAB28P51157 221 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FADDQ13158 208 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 KEAP1Q14145 624 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ELOAQ14241 798 aaKnown RBP10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 IFI44LQ53G44 452 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SHQ1Q6PI26 577 aaKnown RBP10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 THAP3Q8WTV1 239 aaPredicted RBP10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RBPMSQ93062 196 aaKnown RBP10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 VWCEQ96DN2 955 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DMRT3Q9NQL9 472 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DZANK1Q9NVP4 752 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 COMMD9Q9P000 198 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MAN2B2Q9Y2E5 1009 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PCDHB11Q9Y5F2 797 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HRH3Q9Y5N1 445 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ASPDHA6ND91 283 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 VEGFDO43915 354 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MRPS14O60783 128 aaKnown RBP10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PRAMEF4O60810 478 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CLEC2LP0C7M8 214 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CFL1P23528 166 aaKnown RBP10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HRH2P25021 359 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RRAS2P62070 204 aaPredicted RBP10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC35A2P78381 396 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GRIK2Q13002 908 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TBCEQ15813 527 aaPredicted RBP10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GRK1Q15835 563 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DEFB133Q30KQ1 61 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CCNJQ5T5M9 372 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 IRAK1BP1Q5VVH5 260 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PRAMEF9Q5VWM5 478 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FIGNL1Q6PIW4 674 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C6orf120Q7Z4R8 191 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CRIPAKQ8N1N5 446 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OXR1Q8N573 874 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR2L2Q8NH16 312 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ECHDC3Q96DC8 303 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NXPE2Q96DL1 559 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RBM18Q96H35 190 aaKnown RBP10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 WDR92Q96MX6 357 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TGM7Q96PF1 710 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 EXTL2Q9UBQ6 330 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RTTNQ86VV8 2226 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LOC105371267A0A1B0GV96 52 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PRSS44E7EML9 344 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 M0R3H8 397 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SSX4O60224 188 aa10.13□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PPP3R1P63098 170 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms