RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 GIN1Q9NXP7 522 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SLC39A1Q9NY26 324 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 IL37Q9NZH6 218 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 TMEM181Q9P2C4 612 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 GIMAP2Q9UG22 337 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SLC7A8Q9UHI5 535 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CYB5R1Q9UHQ9 305 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ENOPH1Q9UHY7 261 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CYTH4Q9UIA0 394 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ANAPC2Q9UJX6 822 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 RNF150Q9ULK6 438 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 STX8Q9UNK0 236 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 PPP2R2CQ9Y2T4 447 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CBY1Q9Y3M2 126 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 MTF2Q9Y483 593 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CACNG2Q9Y698 323 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CSNK1G3Q9Y6M4 447 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 COL4A1P02462 1669 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ARAP2Q8WZ64 1704 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 LOC285556D6RIA3 1793 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SMCHD1A6NHR9 2005 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 COL5A1P20908 1838 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 FREM2Q5SZK8 3169 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 FRYLO94915 3013 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SYNJ2BP-COX16A0A087WUM0 186 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 A0A1W2PPQ1 181 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SH3PXD2BA1X283 911 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 GMNCA6NCL1 334 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SLC9B1P1A6NJY1 282 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ASB14A6NK59 587 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CENPBD1B2RD01 187 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 E7ENQ6 273 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 hCG_2039718K7EN88 272 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 UBXN8O00124 270 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 O00370 1275 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SLC9A3R1O14745 358 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 POLR2DO15514 142 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CLOCKO15516 846 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 AQP9O43315 295 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ADAM20O43506 726 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TRAPPC3O43617 180 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 NDUFA2O43678 99 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SNX3O60493 162 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 PFKFB2O60825 505 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 DKC1O60832 514 aaKnown RBP eCLIP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SMPD2O60906 423 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TSC22D2O75157 780 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ZFAND5O76080 213 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 VTNP04004 478 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 HMGN1P05114 100 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CALB1P05937 261 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SUPT20HL2P0C7V6 817 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 FAM228BP0C875 321 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 UBTFL6P0CB48 400 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ZCCHC18P0CG32 403 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 DLATP10515 647 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 NR2F1P10589 423 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 DBTP11182 482 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 P4HA1P13674 534 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 RPS2P15880 293 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CXCR2P25025 360 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MPZP25189 248 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CASP1P29466 404 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 GDI1P31150 447 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 PHBP35232 272 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 HSPA9P38646 679 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MDH1P40925 334 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 HTR2BP41595 481 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 KRT6CP48668 564 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 HSPA13P48723 471 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 LHX1P48742 406 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 GDI2P50395 445 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 RAB28P51157 221 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 VAMP7P51809 220 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TMEM50BP56557 158 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CARD18P57730 90 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 GNG2P59768 71 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 GPX6P59796 221 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 UBE2HP62256 183 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 KCNJ2P63252 427 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 IFI35P80217 286 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 S100A12P80511 92 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MRPS25P82663 173 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF33BQ06732 778 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CD300CQ08708 224 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TCP10Q12799 353 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CDC20Q12834 499 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 BFSP1Q12934 665 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CDH18Q13634 790 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 COTL1Q14019 142 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 DOC2AQ14183 400 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 RCN2Q14257 317 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MTF1Q14872 753 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 OPCMLQ14982 345 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 EFTUD2Q15029 972 aaKnown RBP eCLIP1.84□□□□□ -2.115e-16■■□□□ 13.9
HMGB1-208ENST00000490788 PON2Q15165 354 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TGFBIQ15582 683 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ALX1Q15699 326 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CAMK4Q16566 473 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MOGAT2Q3SYC2 334 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms