RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 FIGLAQ6QHK4 219 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 ZDHHC1Q8WTX9 485 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 GTF2H4Q92759 462 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 TCEAL3Q969E4 200 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 MEPEQ9NQ76 525 aaPredicted RBP15.56■□□□□ 0.08
COL7A1-210ENST00000487017 TP53I11O14683 189 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 SMAD6O43541 496 aaKnown RBP15.56■□□□□ 0.08
COL7A1-210ENST00000487017 HSD11B2P80365 405 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 SPCS2Q15005 226 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 SLC18B1Q6NT16 456 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 C3orf58Q8NDZ4 430 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 SFXN1Q9H9B4 322 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 KLHL42Q9P2K6 505 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 C7orf72A4D263 438 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 NPIPA2E9PIF3 369 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 NPIPA3F8WFD2 350 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 MSX1P28360 303 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 CARD17Q5XLA6 110 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 SLC35F2Q8IXU6 374 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 CYP8B1Q9UNU6 501 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 USP3Q9Y6I4 520 aa15.56■□□□□ 0.08
COL7A1-210ENST00000487017 DRD5P21918 477 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 PRKXP51817 358 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 RAB40BQ12829 278 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 SF3A2Q15428 464 aaKnown RBP15.55■□□□□ 0.08
COL7A1-210ENST00000487017 C3orf33Q6P1S2 294 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 CYP4V2Q6ZWL3 525 aaPredicted RBP15.55■□□□□ 0.08
COL7A1-210ENST00000487017 COMMD7Q86VX2 200 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 CREB3L4Q8TEY5 395 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 TMEM68Q96MH6 324 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 PPP4R1LQ9P1A2 415 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 FARS2O95363 451 aaKnown RBP15.55■□□□□ 0.08
COL7A1-210ENST00000487017 RNASE10Q5GAN6 216 aaKnown RBP15.55■□□□□ 0.08
COL7A1-210ENST00000487017 NOXA1Q86UR1 476 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 LSMEM2Q8N112 164 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 SHDQ96IW2 340 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 NDUFB2O95178 105 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 CYBAP13498 195 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 IL1RNP18510 177 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 SLC5A2P31639 672 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 TSACCQ96A04 125 aaPredicted RBP15.55■□□□□ 0.08
COL7A1-210ENST00000487017 PDLIM5Q96HC4 596 aaKnown RBP15.55■□□□□ 0.08
COL7A1-210ENST00000487017 NEDD4LQ96PU5 975 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 SERINC2Q96SA4 455 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 NUBP2Q9Y5Y2 271 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 CACNG2Q9Y698 323 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 ATXN1LP0C7T5 689 aaKnown RBP15.55■□□□□ 0.08
COL7A1-210ENST00000487017 CHMP24386 653 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 CD34P28906 385 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 NR4A2P43354 598 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 RGS6P49758 472 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 TBCEQ15813 527 aaPredicted RBP15.55■□□□□ 0.08
COL7A1-210ENST00000487017 ZNF709Q8N972 641 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 PGAM5Q96HS1 289 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 ANKMY1Q9P2S6 941 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 ONECUT3O60422 494 aaPredicted RBP15.55■□□□□ 0.08
COL7A1-210ENST00000487017 PAHP00439 452 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 ALPLP05186 524 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 TFAP2AP05549 437 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 CERS1P27544 350 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 SELPLGQ14242 412 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 LDLRAD1Q5T700 205 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 MTFR2Q6P444 385 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 TOR1AIP2Q8NFQ8 470 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 PRRC1Q96M27 445 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 KLF16Q9BXK1 252 aaPredicted RBP15.55■□□□□ 0.08
COL7A1-210ENST00000487017 FZD3Q9NPG1 666 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 GLS2Q9UI32 602 aa15.55■□□□□ 0.08
COL7A1-210ENST00000487017 NUP98P52948 1817 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 TRIM64BA6NI03 449 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 MC3RP41968 323 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 CCINQ13939 588 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 WDR45BQ5MNZ6 344 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 MAMDC2Q7Z304 686 aaPredicted RBP15.54■□□□□ 0.08
COL7A1-210ENST00000487017 SPRED1Q7Z699 444 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 THAP3Q8WTV1 239 aaPredicted RBP15.54■□□□□ 0.08
COL7A1-210ENST00000487017 SPRYD4Q8WW59 207 aaPredicted RBP15.54■□□□□ 0.08
COL7A1-210ENST00000487017 GAB3Q8WWW8 586 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 TGM7Q96PF1 710 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 SLAMF8Q9P0V8 285 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 PTH2RP49190 550 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 MARCH8Q5T0T0 291 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 KCTD11Q693B1 232 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 C12orf76Q8N812 135 aaPredicted RBP15.54■□□□□ 0.08
COL7A1-210ENST00000487017 OR9A2Q8NGT5 310 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 UBXN10Q96LJ8 280 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 SLC7A11Q9UPY5 501 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 YARS2Q9Y2Z4 477 aaKnown RBP15.54■□□□□ 0.08
COL7A1-210ENST00000487017 CSNK1G3Q9Y6M4 447 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 CSF2RAP15509 400 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 CTXN1P60606 82 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 C1orf61Q13536 156 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 PDZD3Q86UT5 571 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 TMEM102Q8N9M5 508 aaPredicted RBP15.54■□□□□ 0.08
COL7A1-210ENST00000487017 HOXD1Q9GZZ0 328 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 ZNF705EA8MWA4 302 aaPredicted RBP15.54■□□□□ 0.08
COL7A1-210ENST00000487017 PLATP00750 562 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 AMY2AP04746 511 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 CCR7P32248 378 aa15.54■□□□□ 0.08
COL7A1-210ENST00000487017 RORAP35398 523 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms