RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MAP4K2Q12851 820 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 RPS6KA2Q15349 733 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 PRICKLE4Q2TBC4 344 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 CCDC153Q494R4 210 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 GXYLT1Q4G148 440 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 SPIN4Q56A73 249 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 TCHHL1Q5QJ38 904 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 WLSQ5T9L3 541 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 TMEM198Q66K66 360 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ACSM2BQ68CK6 577 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 GDF7Q7Z4P5 450 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 LURAP1LQ8IV03 231 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 SAMD14Q8IZD0 417 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 MMP21Q8N119 569 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 LRRC25Q8N386 305 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 MARVELD2Q8N4S9 558 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF615Q8N8J6 731 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 CHTF18Q8WVB6 975 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ASB5Q8WWX0 329 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 DIO2Q92813 273 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ADIPOR1Q96A54 375 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 SARAFQ96BY9 339 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 LCORQ96JN0 433 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF597Q96LX8 424 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 JSRP1Q96MG2 331 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 SECISBP2Q96T21 854 aaKnown RBP6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ACPTQ9BZG2 426 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 BRINP2Q9C0B6 783 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF703Q9H7S9 590 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 PFDN4Q9NQP4 134 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 PNPLA3Q9NST1 481 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 QPCTLQ9NXS2 382 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 BCAP29Q9UHQ4 241 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 MCM8Q9UJA3 840 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 UTS2RQ9UKP6 389 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ACAD8Q9UKU7 415 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 CES1P1Q9UKY3 287 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 NPFFR2Q9Y5X5 522 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF780BQ9Y6R6 833 aa6.23□□□□□ -1.41
CCDC88A-213ENST00000476903 DCHS2Q6V1P9 2916 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 GNG14A0A1W2PPG7 69 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 A0A1W2PPM1 405 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 C9orf118A6NHY6 69 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 LRRC3CA6NJW4 275 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ENO4A6NNW6 628 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 G3V2L1 256 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 C19orf84I3L1E1 186 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ACOX3O15254 700 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 WDR1O75083 606 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 CDH16O75309 829 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 CRCPO75575 148 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 BCAS2O75934 225 aaPredicted RBP6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 LRATO95237 230 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 SHBGP04278 402 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 IL3P08700 152 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 RFPL3SP0C7P2 107 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 GABRA1P14867 456 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 CHN1P15882 459 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 NAGAP17050 411 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 S1PR1P21453 382 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ACVR2AP27037 513 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 GDF1P27539 372 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ABCD3P28288 659 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 TIA1P31483 386 aaKnown RBP eCLIP6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 SLCO1A2P46721 670 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 CCT5P48643 541 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 HTR6P50406 440 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 NUP107P57740 925 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 FBXW4P57775 412 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 DCAF7P61962 342 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 HMGCS1Q01581 520 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 PMPCAQ10713 525 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 HEPACAMQ14CZ8 416 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 EMC4Q5J8M3 183 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 CFAP157Q5JU67 520 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 FAM219BQ5XKK7 198 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF585AQ6P3V2 769 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 FAM111BQ6SJ93 734 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ZYG11AQ6WRX3 759 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 TMEM64Q6YI46 380 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 B3GNT6Q6ZMB0 384 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 FRMD7Q6ZUT3 714 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 TDRPQ86YL5 185 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 SRRM1Q8IYB3 904 aaKnown RBP6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 LIX1Q8N485 282 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 CCNYL1Q8N7R7 359 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 CCDC63Q8NA47 563 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ADCY4Q8NFM4 1077 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 OR52R1Q8NGF1 315 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 OR5M9Q8NGP3 310 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 LILRB4Q8NHJ6 448 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 RDH11Q8TC12 318 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 SPPL2AQ8TCT8 520 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 CTHRC1Q96CG8 243 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ERP27Q96DN0 273 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 HSPBAP1Q96EW2 488 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 CNRIP1Q96F85 164 aaPredicted RBP6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF681Q96N22 645 aa6.22□□□□□ -1.41
CCDC88A-213ENST00000476903 RILPQ96NA2 401 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms