RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	ZBED6CL	Q96FA7	236 aa	Predicted RBP	13.82	□□□□□ -0.2
VARS-223	ENST00000474643	TRIB1	Q96RU8	372 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	PRPF18	Q99633	342 aa	Known RBP	13.82	□□□□□ -0.2
VARS-223	ENST00000474643	GLIPR2	Q9H4G4	154 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	AKTIP	Q9H8T0	292 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	ANKRA2	Q9H9E1	313 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	DDX18	Q9NVP1	670 aa	Known RBP	13.82	□□□□□ -0.2
VARS-223	ENST00000474643	TAS2R7	Q9NYW3	318 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	MAPRE3	Q9UPY8	281 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	EXO1	Q9UQ84	846 aa	Known RBP	13.82	□□□□□ -0.2
VARS-223	ENST00000474643	SLC6A5	Q9Y345	797 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	ANKRD17	O75179	2603 aa	Known RBP	13.82	□□□□□ -0.2
VARS-223	ENST00000474643	POLQ	O75417	2590 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	NIN	Q8N4C6	2090 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	PRAMEF25	A6NGN4	478 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	SCAMP2	O15127	329 aa	Known RBP	13.81	□□□□□ -0.2
VARS-223	ENST00000474643	HDAC3	O15379	428 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	COQ9	O75208	318 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	REM1	O75628	298 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	SLITRK5	O94991	958 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	CBX7	O95931	251 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	NAGA	P17050	411 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	IGFBP2	P18065	325 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	LBP	P18428	481 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	S1PR1	P21453	382 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	MC3R	P41968	323 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	CASP3	P42574	277 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	KIR2DL3	P43628	341 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	EMX2	Q04743	252 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	ZNF155	Q12901	538 aa	Predicted RBP	13.81	□□□□□ -0.2
VARS-223	ENST00000474643	PTGR1	Q14914	329 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	CEBPE	Q15744	281 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	PRSS53	Q2L4Q9	553 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	ACSF3	Q4G176	576 aa	Predicted RBP	13.81	□□□□□ -0.2
VARS-223	ENST00000474643	TIGD3	Q6B0B8	471 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	NXN	Q6DKJ4	435 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	SLC30A6	Q6NXT4	461 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	NUP54	Q7Z3B4	507 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	ZZZ3	Q8IYH5	903 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	ABTB1	Q969K4	478 aa	Predicted RBP	13.81	□□□□□ -0.2
VARS-223	ENST00000474643	CTHRC1	Q96CG8	243 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	ERP27	Q96DN0	273 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	TMEM41A	Q96HV5	264 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	AMDHD1	Q96NU7	426 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	TREX2	Q9BQ50	279 aa	Predicted RBP	13.81	□□□□□ -0.2
VARS-223	ENST00000474643	SIKE1	Q9BRV8	207 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	PROK2	Q9HC23	129 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	ATAD3A	Q9NVI7	634 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	TAS2R9	Q9NYW1	312 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	ZNF639	Q9UID6	485 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	EDAR	Q9UNE0	448 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	DTX4	Q9Y2E6	619 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	OR10H1	Q9Y4A9	318 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	CCDC168	Q8NDH2	2452 aa		13.81	□□□□□ -0.2
VARS-223	ENST00000474643	NUP214	P35658	2090 aa	Predicted RBP	13.8	□□□□□ -0.2
VARS-223	ENST00000474643	EEF1E1-BLOC1S5	C9J1V9	151 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	EEF1E1	O43324	174 aa	Known RBP	13.8	□□□□□ -0.2
VARS-223	ENST00000474643	TGDS	O95455	350 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	HPN	P05981	417 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	ABCB1	P08183	1280 aa	Predicted RBP	13.8	□□□□□ -0.2
VARS-223	ENST00000474643	G6PD	P11413	515 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	CYP4B1	P13584	511 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	PRPS1L1	P21108	318 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	ASCL1	P50553	236 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	CRYZ	Q08257	329 aa	Known RBP	13.8	□□□□□ -0.2
VARS-223	ENST00000474643	SMU1	Q2TAY7	513 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	EIPR1	Q53HC9	387 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	ZNF385B	Q569K4	471 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	WIPI1	Q5MNZ9	446 aa	Predicted RBP	13.8	□□□□□ -0.2
VARS-223	ENST00000474643	CPTP	Q5TA50	214 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	ENPP6	Q6UWR7	440 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	ZNF551	Q7Z340	670 aa	Predicted RBP	13.8	□□□□□ -0.2
VARS-223	ENST00000474643	YRDC	Q86U90	279 aa	Known RBP	13.8	□□□□□ -0.2
VARS-223	ENST00000474643	ACBD4	Q8NC06	268 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	SIMC1	Q8NDZ2	872 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	OR7G2	Q8NG99	324 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	OR7A2P	Q8NGA2	310 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	PIWIL2	Q8TC59	973 aa	Known RBP	13.8	□□□□□ -0.2
VARS-223	ENST00000474643	COL21A1	Q96P44	957 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	TIMP4	Q99727	224 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	MEAF6	Q9HAF1	191 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	ATP6V1H	Q9UI12	483 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	INTS1	Q8N201	2190 aa	Known RBP	13.8	□□□□□ -0.2
VARS-223	ENST00000474643	PDZD2	O15018	2839 aa		13.8	□□□□□ -0.2
VARS-223	ENST00000474643	GOLGA8Q	A0A0J9YX86	632 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	GOLGA8O	A6NCC3	632 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	FRG2C	A6NGY1	282 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	GOLGA8N	F8WBI6	632 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643		H0Y3Z8	333 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	PLOD3	O60568	738 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	TBX19	O60806	448 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	ABCB7	O75027	752 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	ERN1	O75460	977 aa	Known RBP	13.79	□□□□□ -0.2
VARS-223	ENST00000474643	EFNA1	P20827	205 aa	Predicted RBP	13.79	□□□□□ -0.2
VARS-223	ENST00000474643	PPIC	P45877	212 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	EMD	P50402	254 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	DGKQ	P52824	942 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	PRKAG1	P54619	331 aa		13.79	□□□□□ -0.2
VARS-223	ENST00000474643	MRPS22	P82650	360 aa	Known RBP	13.79	□□□□□ -0.2
VARS-223	ENST00000474643	SNTA1	Q13424	505 aa		13.79	□□□□□ -0.2

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