RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373		H0Y3Z8	333 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	PLOD2	O00469	737 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	SCAMP2	O15127	329 aa	Known RBP	10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	EMC8	O43402	210 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	GMFG	O60234	142 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	CYP4B1	P13584	511 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	GRK2	P25098	689 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	PTPN6	P29350	595 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	EVI2B	P34910	448 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	PTGER4	P35408	488 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	PRIM2	P49643	509 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	RIPPLY3	P57055	190 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	PRSS53	Q2L4Q9	553 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	PGS1	Q32NB8	556 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	LSM12	Q3MHD2	195 aa	Known RBP	10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	CYP27C1	Q4G0S4	372 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	ZNF385B	Q569K4	471 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	EMC4	Q5J8M3	183 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	MEX3B	Q6ZN04	569 aa	Known RBP	10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	GDF7	Q7Z4P5	450 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	PLCZ1	Q86YW0	608 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	MCEMP1	Q8IX19	187 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	OR2L13	Q8N349	312 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	ZNF781	Q8N8C0	355 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	COX18	Q8N8Q8	333 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	FAM83F	Q8NEG4	500 aa	Predicted RBP	10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	OR7A2P	Q8NGA2	310 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	SLC35A4	Q96G79	324 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	SFXN2	Q96NB2	322 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	MS4A4E	Q96PG1	132 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	TRIB1	Q96RU8	372 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	TTYH2	Q9BSA4	534 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	YIPF4	Q9BSR8	244 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	PTGES2	Q9H7Z7	377 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	ZCCHC3	Q9NUD5	404 aa	Known RBP	10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	NOP53	Q9NZM5	478 aa	Known RBP	10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	EXO1	Q9UQ84	846 aa	Known RBP	10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	RPH3A	Q9Y2J0	694 aa	Predicted RBP	10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	RAP2C	Q9Y3L5	183 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	ACTL7B	Q9Y614	415 aa		10.52	□□□□□ -0.73
CPNE1-222	ENST00000473373	FBN2	P35556	2912 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	MED12L	Q86YW9	2145 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	AHRR	A9YTQ3	701 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	NPIPB8	E9PQR5	432 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	ADAM10	O14672	748 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	ITM2A	O43736	263 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	TSPAN2	O60636	221 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	SNUPN	O95149	360 aa	Known RBP	10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	IL2RA	P01589	272 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	HPN	P05981	417 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	ALOX5	P09917	674 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	ENDOU	P21128	410 aa	Known RBP	10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	ATP6V1C1	P21283	382 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	ETV4	P43268	484 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	RPL14	P50914	215 aa	Known RBP	10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	PSG6	Q00889	435 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	GAB1	Q13480	694 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	TP53BP2	Q13625	1128 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	PTGR1	Q14914	329 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	XKR7	Q5GH72	579 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	C6orf136	Q5SQH8	315 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	RAET1L	Q5VY80	246 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	TMEM81	Q6P7N7	255 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	AAGAB	Q6PD74	315 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	ULK2	Q8IYT8	1036 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	MARVELD2	Q8N4S9	558 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	GOLGA6L1	Q8N7Z2	621 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	CDRT4	Q8N9R6	151 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	PIK3R3	Q92569	461 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	PGM2	Q96G03	612 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	FCRL1	Q96LA6	429 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	C3orf30	Q96M34	536 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	UCK2	Q9BZX2	261 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	ACSS1	Q9NUB1	689 aa	Predicted RBP	10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	TAS2R10	Q9NYW0	307 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	PCDHGB4	Q9UN71	923 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	FAF1	Q9UNN5	650 aa	Predicted RBP	10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	HRH3	Q9Y5N1	445 aa		10.51	□□□□□ -0.73
CPNE1-222	ENST00000473373	KIAA1549	Q9HCM3	1950 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	TMEM120B	A0PK00	339 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	HSPB2	A8KAH6	182 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	UTS2	O95399	124 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	ACTL6A	O96019	429 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	GLI4	P10075	376 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	KIT	P10721	976 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	BMP7	P18075	431 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	PRPS1L1	P21108	318 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	DPP4	P27487	766 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	SRD5A2	P31213	254 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	SOX18	P35713	384 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	CRYZ	Q08257	329 aa	Known RBP	10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	HSPB2	Q16082	182 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	UGT3A2	Q3SY77	523 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	ATG16L1	Q676U5	607 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	PPP4R4	Q6NUP7	873 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	FIGNL1	Q6PIW4	674 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	P4HA3	Q7Z4N8	544 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	GALNT10	Q86SR1	603 aa		10.5	□□□□□ -0.73
CPNE1-222	ENST00000473373	TRIM42	Q8IWZ5	723 aa		10.5	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 18 ms