RNA–Protein interactions for RNA: ENST00000470045.1

COMMD3-208, Transcript of COMM domain containing 3, human

TSL 2

Gene COMMD3, Length 662 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD3-208	ENST00000470045	UCK2	Q9BZX2	261 aa		12.8	□□□□□ -0.36
COMMD3-208	ENST00000470045		Q9N2J8	555 aa		12.8	□□□□□ -0.36
COMMD3-208	ENST00000470045	CBLC	Q9ULV8	474 aa		12.8	□□□□□ -0.36
COMMD3-208	ENST00000470045	ABCG2	Q9UNQ0	655 aa		12.8	□□□□□ -0.36
COMMD3-208	ENST00000470045	MRPS18C	Q9Y3D5	142 aa	Known RBP	12.8	□□□□□ -0.36
COMMD3-208	ENST00000470045	ACTL7B	Q9Y614	415 aa		12.8	□□□□□ -0.36
COMMD3-208	ENST00000470045	PDZD2	O15018	2839 aa		12.8	□□□□□ -0.36
COMMD3-208	ENST00000470045	DOCK7	Q96N67	2140 aa		12.8	□□□□□ -0.36
COMMD3-208	ENST00000470045	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	KDM4E	B2RXH2	506 aa	Predicted RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	SCAMP2	O15127	329 aa	Known RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	ITM2A	O43736	263 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	PEX11A	O75192	247 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	SKAP2	O75563	359 aa	Predicted RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	NKX2-2	O95096	273 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	IL33	O95760	270 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	SERPINE1	P05121	402 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	PRPS2	P11908	318 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	GRK2	P25098	689 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	SRD5A2	P31213	254 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	CEACAM8	P31997	349 aa	Predicted RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	EVI2B	P34910	448 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	RPL3	P39023	403 aa	Known RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	GFRA1	P56159	465 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	MPP2	Q14168	576 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	MLC1	Q15049	377 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	TOMM20	Q15388	145 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	ZNHIT3	Q15649	155 aa	Predicted RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	DECR1	Q16698	335 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	ATP6AP1L	Q52LC2	224 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	EXOSC6	Q5RKV6	272 aa	Known RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	CEP85L	Q5SZL2	805 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	NSUN5P2	Q63ZY6	315 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	R3HCC1L	Q7Z5L2	792 aa	Known RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	WDR53	Q7Z5U6	358 aa	Predicted RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	CROCCP2	Q86T23	111 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	YRDC	Q86U90	279 aa	Known RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	LACC1	Q8IV20	430 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	LIX1L	Q8IVB5	337 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	OR10Q1	Q8NGQ4	319 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	ABTB1	Q969K4	478 aa	Predicted RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	GIMAP5	Q96F15	307 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	C14orf79	Q96F83	325 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	KCNJ16	Q9NPI9	418 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	FAM120C	Q9NX05	1096 aa	Known RBP	12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	ALKBH4	Q9NXW9	302 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	SH3BP4	Q9P0V3	963 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	FBXL2	Q9UKC9	423 aa		12.79	□□□□□ -0.36
COMMD3-208	ENST00000470045	PCNX3	Q9H6A9	2034 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	CD8B2	A6NJW9	211 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	LYPLA1	O75608	230 aa	Predicted RBP	12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	SNUPN	O95149	360 aa	Known RBP	12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	CPN1	P15169	458 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	GPC1	P35052	558 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	TIMP3	P35625	211 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	HPCAL1	P37235	193 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	MANF	P55145	182 aa	Known RBP	12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	PTGR1	Q14914	329 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	CHI3L2	Q15782	390 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	SLC25A35	Q3KQZ1	300 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	MEX3B	Q6ZN04	569 aa	Known RBP	12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	FADS6	Q8N9I5	356 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	CDRT4	Q8N9R6	151 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	NAXE	Q8NCW5	288 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	CEP70	Q8NHQ1	597 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	PSMA8	Q8TAA3	256 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	DTNBP1	Q96EV8	351 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	MS4A4E	Q96PG1	132 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	C20orf27	Q9GZN8	174 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	SIRT3	Q9NTG7	399 aa	Predicted RBP	12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	ASIC5	Q9NY37	505 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	FLRT3	Q9NZU0	649 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	HAO1	Q9UJM8	370 aa		12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	MRTO4	Q9UKD2	239 aa	Known RBP	12.78	□□□□□ -0.36
COMMD3-208	ENST00000470045	TACC2	O95359	2948 aa		12.77	□□□□□ -0.36
COMMD3-208	ENST00000470045	GXYLT2	A0PJZ3	443 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	MBD3L4	A6NDZ8	208 aa	Predicted RBP	12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	MBD3L3	A6NE82	208 aa	Predicted RBP	12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	MBD3L5	A6NJ08	208 aa	Predicted RBP	12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	HSPB2	A8KAH6	182 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	C17orf51	A8MQB3	221 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	ZWINT	O95229	277 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	HSPA4L	O95757	839 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	IGKV1D-16	P01601	117 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	DDX5	P17844	614 aa	Known RBP	12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	SSTR2	P30874	369 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	PSMD4	P55036	377 aa	Known RBP	12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	C21orf58	P58505	322 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	ABCE1	P61221	599 aa	Known RBP	12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	SF3B4	Q15427	424 aa	Known RBP eCLIP	12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	HSPB2	Q16082	182 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	SMU1	Q2TAY7	513 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	VPS26B	Q4G0F5	336 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	IL23R	Q5VWK5	629 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	MFSD12	Q6NUT3	480 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	POMZP3	Q6PJE2	187 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	ADGRE4P	Q86SQ3	457 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	IFNE	Q86WN2	208 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	RIMKLA	Q8IXN7	391 aa		12.77	□□□□□ -0.37
COMMD3-208	ENST00000470045	ZNF781	Q8N8C0	355 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms