RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 FRMD6Q96NE9 622 aa12.77□□□□□ -0.36
BRCA1-209ENST00000470026 DCLRE1CQ96SD1 692 aaKnown RBP12.77□□□□□ -0.36
BRCA1-209ENST00000470026 ATF6BQ99941 703 aa12.77□□□□□ -0.36
BRCA1-209ENST00000470026 ACTRT3Q9BYD9 372 aa12.77□□□□□ -0.36
BRCA1-209ENST00000470026 RMI1Q9H9A7 625 aa12.77□□□□□ -0.36
BRCA1-209ENST00000470026 DDX28Q9NUL7 540 aaKnown RBP12.77□□□□□ -0.36
BRCA1-209ENST00000470026 GIMAP4Q9NUV9 329 aa12.77□□□□□ -0.36
BRCA1-209ENST00000470026 TOR4AQ9NXH8 423 aa12.77□□□□□ -0.36
BRCA1-209ENST00000470026 APOBEC3BQ9UH17 382 aaKnown RBP12.77□□□□□ -0.36
BRCA1-209ENST00000470026 NDRG2Q9UN36 371 aaKnown RBP12.77□□□□□ -0.36
BRCA1-209ENST00000470026 SHISA3A0PJX4 238 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 TFECO14948 347 aaPredicted RBP12.77□□□□□ -0.37
BRCA1-209ENST00000470026 STATHP02808 62 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 HLA-DPB1P04440 258 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 C8orf89P0DMQ9 161 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 CPN2P22792 545 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 CFL1P23528 166 aaKnown RBP12.77□□□□□ -0.37
BRCA1-209ENST00000470026 APEX1P27695 318 aaKnown RBP12.77□□□□□ -0.37
BRCA1-209ENST00000470026 IFNA8P32881 189 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 EVX1P49640 407 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 BDH1Q02338 343 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 LCN1P1Q5VSP4 162 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 SLC30A6Q6NXT4 461 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 MBOAT2Q6ZWT7 520 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 LHFPL3Q86UP9 236 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 LIX1LQ8IVB5 337 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 ASCC1Q8N9N2 400 aaKnown RBP12.77□□□□□ -0.37
BRCA1-209ENST00000470026 OR9A2Q8NGT5 310 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 KLK6Q92876 244 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 SMARCD2Q92925 531 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 SLC35A4Q96G79 324 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 C10orf90Q96M02 699 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 MARCH7Q9H992 704 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 PHPT1Q9NRX4 125 aaPredicted RBP12.77□□□□□ -0.37
BRCA1-209ENST00000470026 IMP3Q9NV31 184 aaKnown RBP12.77□□□□□ -0.37
BRCA1-209ENST00000470026 LYARQ9NX58 379 aaKnown RBP12.77□□□□□ -0.37
BRCA1-209ENST00000470026 SLC13A4Q9UKG4 626 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 CBLCQ9ULV8 474 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 ZFR2Q9UPR6 939 aaKnown RBP12.77□□□□□ -0.37
BRCA1-209ENST00000470026 SLC17A4Q9Y2C5 497 aa12.77□□□□□ -0.37
BRCA1-209ENST00000470026 MYO7AQ13402 2215 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 LINC00854A0A1B0GVQ3 168 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 GSAPA4D1B5 854 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 TBC1D3BA6NDS4 549 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 C5orf67F2Z3F1 127 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 CASKO14936 926 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 MID1O15344 667 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 CHST10O43529 356 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 AKAP8O43823 692 aaKnown RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 PCDH8O95206 1070 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 CEACAM5P06731 702 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 CCNYL3P0C7X3 344 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 HOXC5Q00444 222 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 MLLT1Q03111 559 aaPredicted RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 ENPP2Q13822 863 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 PDGFRLQ15198 375 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 CLEC12AQ5QGZ9 265 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 CNIH2Q6PI25 160 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 FRRS1Q6ZNA5 592 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 GDF7Q7Z4P5 450 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 NRROSQ86YC3 692 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 KLHL36Q8N4N3 616 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 CAMKK1Q8N5S9 505 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 ZFP41Q8N8Y5 198 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 OR4F15Q8NGB8 312 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 SMG7Q92540 1137 aaKnown RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 KCNJ15Q99712 375 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 RSPH9Q9H1X1 276 aaPredicted RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 ZDHHC4Q9NPG8 344 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 RBFOX1Q9NWB1 397 aaKnown RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 OBP2AQ9NY56 170 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 DPP7Q9UHL4 492 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 CLCA2Q9UQC9 943 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 KCNK6Q9Y257 313 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 CDH10Q9Y6N8 788 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 MDC1Q14676 2089 aaKnown RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 A8MV72 311 aaPredicted RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 GABRPO00591 440 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 RNGTTO60942 597 aaKnown RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 TRIM3O75382 744 aaPredicted RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 HMGN1P05114 100 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 MAP2K3P46734 347 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 PDX1P52945 283 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 CAV3P56539 151 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 CST6Q15828 149 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 C2orf27AQ580R0 203 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 TYW3Q6IPR3 259 aaKnown RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 TRILQ7L0X0 811 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 RRM2BQ7LG56 351 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 NOXA1Q86UR1 476 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 GALNT12Q8IXK2 581 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 TCTE3Q8IZS6 198 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 SLC41A3Q96GZ6 507 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 SENP5Q96HI0 755 aaPredicted RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 MCHR1Q99705 422 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 TRMT61BQ9BVS5 477 aaKnown RBP12.76□□□□□ -0.37
BRCA1-209ENST00000470026 TEX12Q9BXU0 123 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 RNF32Q9H0A6 362 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 OSGEPL1Q9H4B0 414 aa12.76□□□□□ -0.37
BRCA1-209ENST00000470026 RERGLQ9H628 205 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms