RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CACNA1IQ9P0X4 2223 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 GREB1Q4ZG55 1949 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 BLOC1S5-TXNDC5H3BN57 136 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 RPP14O95059 124 aaKnown RBP10.94□□□□□ -0.66
NPHP4-204ENST00000460696 DHFRP00374 187 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 ELAVL4P26378 380 aaKnown RBP10.94□□□□□ -0.66
NPHP4-204ENST00000460696 ACVR1BP36896 505 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 BLKP51451 505 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 ENPP2Q13822 863 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 DESI1Q6ICB0 168 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 SFTPA1Q8IWL2 248 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 PRRC1Q96M27 445 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 DGAT2Q96PD7 388 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 GAL3ST1Q99999 423 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 TRIM36Q9NQ86 728 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 SLC7A7Q9UM01 511 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 C2orf74A8MZ97 194 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 SDC3O75056 442 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 HOXA9P31269 272 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 PYCR1P32322 319 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 XCR1P46094 333 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 PARP16Q8N5Y8 322 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 PDXPQ96GD0 296 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 FAM83CQ9BQN1 747 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 OR52A5Q9H2C5 316 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 MTHFD2LQ9H903 347 aaPredicted RBP10.94□□□□□ -0.66
NPHP4-204ENST00000460696 CNOT2Q9NZN8 540 aaKnown RBP10.94□□□□□ -0.66
NPHP4-204ENST00000460696 HCN3Q9P1Z3 774 aa10.94□□□□□ -0.66
NPHP4-204ENST00000460696 ELOA3DA6NLF2 546 aaPredicted RBP10.93□□□□□ -0.66
NPHP4-204ENST00000460696 GREM1O60565 184 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 BCL6P41182 706 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 NAA10P41227 235 aaPredicted RBP10.93□□□□□ -0.66
NPHP4-204ENST00000460696 KCNJ5P48544 419 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 ATP12AP54707 1039 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 WNT4P56705 351 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 ELOA3BQ3SY89 546 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 TMEM52BQ4KMG9 183 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 ADAMTSL4Q6UY14 1074 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 BTLAQ7Z6A9 289 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 ACBD7Q8N6N7 88 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 ELOA3Q8NG57 546 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 OR2L3Q8NG85 312 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 C7orf34Q96L11 122 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 TMEM168Q9H0V1 697 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 Q9N2J8 555 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 THAP10Q9P2Z0 257 aaPredicted RBP10.93□□□□□ -0.66
NPHP4-204ENST00000460696 RHPN2P1A8MT19 583 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 CPNE3O75131 537 aaKnown RBP10.93□□□□□ -0.66
NPHP4-204ENST00000460696 AHRP35869 848 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 MAGEA2P43356 314 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 CAV3P56539 151 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 SMAD4Q13485 552 aaKnown RBP10.93□□□□□ -0.66
NPHP4-204ENST00000460696 COMMD2Q86X83 199 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 OR4F15Q8NGB8 312 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 PHOSPHO1Q8TCT1 267 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 MMABQ96EY8 250 aaPredicted RBP10.93□□□□□ -0.66
NPHP4-204ENST00000460696 ERMAPQ96PL5 475 aaPredicted RBP10.93□□□□□ -0.66
NPHP4-204ENST00000460696 CSF3RQ99062 836 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 THSD1Q9NS62 852 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 MRPL39Q9NYK5 338 aaKnown RBP10.93□□□□□ -0.66
NPHP4-204ENST00000460696 USP36Q9P275 1121 aaKnown RBP10.93□□□□□ -0.66
NPHP4-204ENST00000460696 TRBV5-3A0A0A0MS03 114 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 A0A1B0GVT2 93 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 PRSS38A1L453 326 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 TNFSF8P32971 234 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 REEP5Q00765 189 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 CRYZQ08257 329 aaKnown RBP10.93□□□□□ -0.66
NPHP4-204ENST00000460696 NDUFAF6Q330K2 333 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 TCTN3Q6NUS6 607 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 SYCE2Q6PIF2 218 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 RTL10Q7L3V2 364 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 PINK1Q9BXM7 581 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 OR8D2Q9GZM6 311 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 FGF22Q9HCT0 170 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 SPHK1Q9NYA1 384 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 ITGB1BP2Q9UKP3 347 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 WDR37Q9Y2I8 494 aa10.93□□□□□ -0.66
NPHP4-204ENST00000460696 OR6C70A6NIJ9 312 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 C12orf71A8MTZ7 269 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 A8MU76 341 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 MAN2B1O00754 1011 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 PRODHO43272 600 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 KHDRBS3O75525 346 aaKnown RBP10.92□□□□□ -0.66
NPHP4-204ENST00000460696 JUNDP17535 347 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 EXOSC7Q15024 291 aaKnown RBP10.92□□□□□ -0.66
NPHP4-204ENST00000460696 EOGTQ5NDL2 527 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 FAM83FQ8NEG4 500 aaPredicted RBP10.92□□□□□ -0.66
NPHP4-204ENST00000460696 ZFYVE21Q9BQ24 234 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 RMI1Q9H9A7 625 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 OR6C2Q9NZP2 312 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 ALPK2Q86TB3 2170 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 A0A1W2PRG6 482 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 LRIT2A6NDA9 550 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 UNC119BA6NIH7 251 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 H0Y8X5 98 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 RAB14P61106 215 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 DPTQ07507 201 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 MESP2Q0VG99 397 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 PON3Q15166 354 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 CTF1Q16619 201 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms