RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 KLHL29Q96CT2 875 aa12.89□□□□□ -0.35
HMGN1-208ENST00000443046 ZBED6CLQ96FA7 236 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-208ENST00000443046 GMPPAQ96IJ6 420 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-208ENST00000443046 GPR78Q96P69 363 aa12.89□□□□□ -0.35
HMGN1-208ENST00000443046 NTMT1Q9BV86 223 aa12.89□□□□□ -0.35
HMGN1-208ENST00000443046 RTN4RQ9BZR6 473 aa12.89□□□□□ -0.35
HMGN1-208ENST00000443046 TRIM31Q9BZY9 425 aa12.89□□□□□ -0.35
HMGN1-208ENST00000443046 NOL11Q9H8H0 719 aaKnown RBP12.89□□□□□ -0.35
HMGN1-208ENST00000443046 PPP4R1LQ9P1A2 415 aa12.89□□□□□ -0.35
HMGN1-208ENST00000443046 TNPO3Q9Y5L0 923 aaKnown RBP12.89□□□□□ -0.35
HMGN1-208ENST00000443046 AP4B1Q9Y6B7 739 aa12.89□□□□□ -0.35
HMGN1-208ENST00000443046 A0A096LNT2 108 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 NME6O75414 186 aaPredicted RBP12.88□□□□□ -0.35
HMGN1-208ENST00000443046 ALDOAP04075 364 aaKnown RBP12.88□□□□□ -0.35
HMGN1-208ENST00000443046 GFAPP14136 432 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 PSMB1P20618 241 aaKnown RBP12.88□□□□□ -0.35
HMGN1-208ENST00000443046 IL12BP29460 328 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 EVI2BP34910 448 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 IRF9Q00978 393 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 ZNF844Q08AG5 666 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 TRAF3Q13114 568 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 ACAP2Q15057 778 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 KRTAP24-1Q3LI83 254 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 C3orf62Q6ZUJ4 267 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 GGNQ86UU5 652 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 WFDC8Q8IUA0 241 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 OR5M1Q8NGP8 315 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 GFM2Q969S9 779 aaKnown RBP12.88□□□□□ -0.35
HMGN1-208ENST00000443046 EFHD2Q96C19 240 aaPredicted RBP12.88□□□□□ -0.35
HMGN1-208ENST00000443046 C1GALT1C1Q96EU7 318 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 ACTR6Q9GZN1 396 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 MED11Q9P086 117 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 GPR52Q9Y2T5 361 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 EMC9Q9Y3B6 208 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 MAGED1Q9Y5V3 778 aaPredicted RBP12.88□□□□□ -0.35
HMGN1-208ENST00000443046 ZNF780BQ9Y6R6 833 aa12.88□□□□□ -0.35
HMGN1-208ENST00000443046 H3BML4 177 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 EIF3HO15372 352 aaKnown RBP eCLIP12.87□□□□□ -0.35
HMGN1-208ENST00000443046 GSTA2P09210 222 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 CDKN1AP38936 164 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 RPS3AP61247 264 aaKnown RBP12.87□□□□□ -0.35
HMGN1-208ENST00000443046 TRA2BP62995 288 aaKnown RBP12.87□□□□□ -0.35
HMGN1-208ENST00000443046 MRPS22P82650 360 aaKnown RBP12.87□□□□□ -0.35
HMGN1-208ENST00000443046 FAM83EQ2M2I3 478 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 PGGHGQ32M88 737 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 NCMAPQ5T1S8 102 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 BEND4Q6ZU67 534 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 CCDC91Q7Z6B0 441 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 CREG2Q8IUH2 290 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 CCDC116Q8IYX3 515 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 UHMK1Q8TAS1 419 aaKnown RBP12.87□□□□□ -0.35
HMGN1-208ENST00000443046 SMAP2Q8WU79 429 aaPredicted RBP12.87□□□□□ -0.35
HMGN1-208ENST00000443046 FBXW5Q969U6 566 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 C11orf24Q96F05 449 aaPredicted RBP12.87□□□□□ -0.35
HMGN1-208ENST00000443046 GRIP2Q9C0E4 1043 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 STMN4Q9H169 189 aaPredicted RBP12.87□□□□□ -0.35
HMGN1-208ENST00000443046 FOLH1BQ9HBA9 442 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 LIPT1Q9Y234 373 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 SNX24Q9Y343 169 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 RNF115Q9Y4L5 304 aa12.87□□□□□ -0.35
HMGN1-208ENST00000443046 FREM1Q5H8C1 2179 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 IGLV3-32A0A0A0MS00 114 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 HMX2A2RU54 273 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 SCO2O43819 266 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 GPRIN2O60269 458 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 PLOD3O60568 738 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 ADAM11O75078 769 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 NDUFS7O75251 213 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 CD8AP01732 235 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 C2P06681 752 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 TCP1P17987 556 aaKnown RBP12.86□□□□□ -0.35
HMGN1-208ENST00000443046 THBS2P35442 1172 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 KRT20P35900 424 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 CCNG1P51959 295 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 PSG6Q00889 435 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 IFT88Q13099 833 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 CTU2Q2VPK5 515 aaKnown RBP12.86□□□□□ -0.35
HMGN1-208ENST00000443046 GGTA1PQ4G0N0 100 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 C6orf52Q5T4I8 152 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.86□□□□□ -0.35
HMGN1-208ENST00000443046 SLC44A2Q8IWA5 706 aaPredicted RBP12.86□□□□□ -0.35
HMGN1-208ENST00000443046 CTAGE3PQ8IX95 158 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 KAT2AQ92830 837 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 NEUROG1Q92886 237 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 ADGRG7Q96K78 797 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 PTGES2Q9H7Z7 377 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 LRTM1Q9HBL6 345 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 FANCFQ9NPI8 374 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 SDHAF3Q9NRP4 125 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 FARSBQ9NSD9 589 aaKnown RBP12.86□□□□□ -0.35
HMGN1-208ENST00000443046 TMEM160Q9NX00 188 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 FLRT3Q9NZU0 649 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 CDC42EP3Q9UKI2 254 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 UTS2RQ9UKP6 389 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 CLEC4AQ9UMR7 237 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 ABCG2Q9UNQ0 655 aa12.86□□□□□ -0.35
HMGN1-208ENST00000443046 GCM2O75603 506 aaPredicted RBP12.85□□□□□ -0.35
HMGN1-208ENST00000443046 KLHL2O95198 593 aa12.85□□□□□ -0.35
HMGN1-208ENST00000443046 SGCBQ16585 318 aa12.85□□□□□ -0.35
HMGN1-208ENST00000443046 ZNF672Q499Z4 452 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms