RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PMS2P3Q13401 168 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 CLPPQ16740 277 aaPredicted RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 FAM74A1Q5RGS3 127 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 TRMT10AQ8TBZ6 339 aaKnown RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 MTFMTQ96DP5 389 aaKnown RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 SORCS2Q96PQ0 1159 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 JAM3Q9BX67 310 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 DPEP3Q9H4B8 488 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 PLCXD1Q9NUJ7 323 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SLC35A3Q9Y2D2 325 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 PPP5D1E7EU14 171 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SCG5P05408 212 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 CCR7P32248 378 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 ZNF92Q03936 586 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 ENDOGQ14249 297 aaKnown RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 IQCJQ1A5X6 159 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 ZNF691Q5VV52 312 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 MOCOSQ96EN8 888 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 P2RX7Q99572 595 aaKnown RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 RBCK1Q9BYM8 510 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 BCO2Q9BYV7 579 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 POP7O75817 140 aaKnown RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 NDUFB2O95178 105 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 VEGFAP15692 232 aaPredicted RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 ERVK-16P61578 105 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 LTB4RQ15722 352 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 FLYWCH1Q4VC44 716 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SLC24A5Q71RS6 500 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 RTL10Q7L3V2 364 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 TMEM150AQ86TG1 271 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SLC22A8Q8TCC7 542 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 GPX8Q8TED1 209 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 RDH14Q9HBH5 336 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 TXNL4BQ9NX01 149 aaKnown RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 SLCO3A1Q9UIG8 710 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SLC25A11Q02978 314 aaKnown RBP6.84□□□□□ -1.32
VPS53-204ENST00000437048 GRIN2CQ14957 1233 aa6.84□□□□□ -1.32
VPS53-204ENST00000437048 CNN3Q15417 329 aaKnown RBP6.84□□□□□ -1.32
VPS53-204ENST00000437048 PPM1JQ5JR12 505 aa6.84□□□□□ -1.32
VPS53-204ENST00000437048 NPNTQ6UXI9 565 aa6.84□□□□□ -1.32
VPS53-204ENST00000437048 IL34Q6ZMJ4 242 aa6.84□□□□□ -1.32
VPS53-204ENST00000437048 SLC35D2Q76EJ3 337 aa6.84□□□□□ -1.32
VPS53-204ENST00000437048 SLC6A7Q99884 636 aa6.84□□□□□ -1.32
VPS53-204ENST00000437048 TMEM98Q9Y2Y6 226 aa6.84□□□□□ -1.32
VPS53-204ENST00000437048 NALCNQ8IZF0 1738 aa6.84□□□□□ -1.32
VPS53-204ENST00000437048 TTC24A2A3L6 582 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 ZNF705FA8MVS1 300 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 ZNF705DP0CH99 300 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 ZNF705BP0CI00 300 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 MSX2P35548 267 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 ITPRIPL2Q3MIP1 535 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 MINDY4Q4G0A6 757 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CPZQ66K79 652 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CORO6Q6QEF8 472 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 EDAQ92838 391 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CLSTN3Q9BQT9 956 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 GBA2Q9HCG7 927 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 ASF1BQ9NVP2 202 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 STYXL1Q9Y6J8 313 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 EDDM13A0A1B0GTR0 161 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ARRDC5A6NEK1 342 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 H7BY64 318 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 J3QLW9 94 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ZNF19P17023 458 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 MAKP20794 623 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 NMBRP28336 390 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 IL13RA1P78552 427 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CTU2Q2VPK5 515 aaKnown RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 MAMDC2Q7Z304 686 aaPredicted RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 PTRH1Q86Y79 214 aaKnown RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 RBMXL1Q96E39 390 aaKnown RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 WRAP53Q9BUR4 548 aaKnown RBP6.83□□□□□ -1.32
VPS53-204ENST00000437048 SEMA4GQ9NTN9 838 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 KLK14Q9P0G3 267 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 GNG13Q9P2W3 67 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 MDFIC2A0A1B0GVS7 189 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 TSPAN11A1L157 253 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CD9P21926 228 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DESI1Q6ICB0 168 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ADIPOR2Q86V24 386 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 NLGN2Q8NFZ4 835 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 OR7D4Q8NG98 312 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 GTF2H4Q92759 462 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 PINK1Q9BXM7 581 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 TXLNGYQ9BZA5 131 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ADAM19Q9H013 955 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ELOVL2Q9NXB9 296 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 COQ3Q9NZJ6 369 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 TK1P04183 234 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 PROS1P07225 676 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 TUBG1P23258 451 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 DTYMKP23919 212 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 OXA1LQ15070 435 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 RAP1GAP2Q684P5 730 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 TPRG1Q6ZUI0 275 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 WDR5BQ86VZ2 330 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 CACUL1Q86Y37 369 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 ADGRF3Q8IZF5 1079 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 UMODL1-AS1Q8N2C9 162 aa6.83□□□□□ -1.32
VPS53-204ENST00000437048 FAM83CQ9BQN1 747 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms