RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 GEMIN6Q8WXD5 167 aaKnown RBP15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 SLCO4A1Q96BD0 722 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 CHID1Q9BWS9 393 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 WWTR1Q9GZV5 400 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 ZNF350Q9GZX5 532 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 SLC38A1Q9H2H9 487 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 MTHFD2LQ9H903 347 aaPredicted RBP15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 MKLN1Q9UL63 735 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 ZNF232Q9UNY5 417 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 IFT52Q9Y366 437 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 DCDC2BA2VCK2 349 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 KCNK2O95069 426 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 FABP3P05413 133 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 NRG3P56975 720 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 SSPNQ14714 243 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 LARS2Q15031 903 aaKnown RBP15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 MAPK11Q15759 364 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 BTBD16Q32M84 506 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 CYP27C1Q4G0S4 372 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 ZNF311Q5JNZ3 666 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 FRRS1Q6ZNA5 592 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 OLIG3Q7RTU3 272 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 VTCN1Q7Z7D3 282 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 ZDHHC21Q8IVQ6 265 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 C9orf40Q8IXQ3 194 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 FAM86B1Q8N7N1 296 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 OR5L2Q8NGL0 311 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 SEMA4CQ9C0C4 833 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 NRSN2Q9GZP1 204 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 ZNF700Q9H0M5 742 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 ARMC7Q9H6L4 198 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 KLHL28Q9NXS3 571 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 NKX1-2Q9UD57 310 aaPredicted RBP15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 GPR55Q9Y2T6 319 aaPredicted RBP15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 HS3ST3B1Q9Y662 390 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 USP24Q9UPU5 2620 aa15.86■□□□□ 0.13
CCDC28B-202ENST00000421922 IGHV1-45A0A0A0MS14 117 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 NSG1A0A0A6YYJ2 146 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 CDRT15L2A8MXV6 281 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 GNGT2O14610 69 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 ACOX3O15254 700 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 DEAF1O75398 565 aaPredicted RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 GCM2O75603 506 aaPredicted RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 MFN2O95140 757 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 LDLRP01130 860 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 MT-ND1P03886 318 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 CT45A8P0DMV1 189 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 CT45A9P0DMV2 189 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 IL7RP16871 459 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 DRD5P21918 477 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 IL12BP29460 328 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 PIGAP37287 484 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 NR0B1P51843 470 aaKnown RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 RNF4P78317 190 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 PCOLCEQ15113 449 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 EIPR1Q53HC9 387 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 CT45A2Q5DJT8 189 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 TYW3Q6IPR3 259 aaKnown RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 IGF2-ASQ6U949 168 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 PAPD5Q8NDF8 572 aaKnown RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 NFAM1Q8NET5 270 aaPredicted RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 OR52P1PQ8NH57 321 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 LRTOMTQ8WZ04 291 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 PMM1Q92871 262 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 WDR77Q9BQA1 342 aaPredicted RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 PINK1Q9BXM7 581 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 DEFB126Q9BYW3 111 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 NXF5Q9H1B4 397 aaKnown RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 VCX3BQ9H321 246 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 PPIEQ9UNP9 301 aaKnown RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 SLC9A8Q9Y2E8 581 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 CFAP47Q6ZTR5 3102 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 DSPPQ9NZW4 1301 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 PEX12O00623 359 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 HS6ST1O60243 411 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 KIAA0513O60268 411 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 ZFAND5O76080 213 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 IFNW1P05000 195 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 DBIP07108 87 aaKnown RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 PABPC4LP0CB38 370 aaKnown RBP15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 COX6A1P12074 109 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 ITGA2P17301 1181 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 PLCXD2Q0VAA5 305 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 TRIP10Q15642 601 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 LIN52Q52LA3 116 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 NDUFAF7Q7L592 441 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 HMGN2P46Q86SG4 172 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 TAGAPQ8N103 731 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 ZNF614Q8N883 585 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 BCORP1Q8N888 145 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 OR4N2Q8NGD1 307 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 NUBPLQ8TB37 319 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 ADIPOR1Q96A54 375 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 NACC2Q96BF6 587 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 NXPE2Q96DL1 559 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 HSPBAP1Q96EW2 488 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 ZNF354BQ96LW1 612 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 PKP2Q99959 881 aa15.85■□□□□ 0.13
CCDC28B-202ENST00000421922 GPN2Q9H9Y4 310 aaPredicted RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms