RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 XRN1Q8IZH2 1706 aaKnown RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 SHPRHQ149N8 1683 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 KIR2DS5A0A0G2JLQ3 304 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 A0A0G2JNG1 304 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF736B4DX44 427 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 C17orf112F2Z3M2 114 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 KIR2DS3K7RE56 304 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 SOX14O95416 240 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 TFP02787 698 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 STSP08842 583 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 NUDT7P0C024 238 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 PPP3CBP16298 524 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 EFNA1P20827 205 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 PRKACBP22694 351 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 GKP32189 559 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 MC3RP41968 323 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 AFF3P51826 1226 aaKnown RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 TBPL1P62380 186 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 PRKCZQ05513 592 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 KIR2DS5Q14953 304 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 C3orf38Q5JPI3 329 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 AWAT2Q6E213 333 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 MAMDC4Q6UXC1 1216 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 CCDC71Q8IV32 467 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 OR5D14Q8NGL3 314 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 OR9I1Q8NGQ6 314 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 UBTD2Q8WUN7 234 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 GCDHQ92947 438 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 PMEPA1Q969W9 287 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 DPCDQ9BVM2 203 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 CERS4Q9HA82 394 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 SLAMF7Q9NQ25 335 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 SLC7A7Q9UM01 511 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 HHLA2Q9UM44 414 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 C2orf72A6NCS6 295 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 AGAP14A8MT82 685 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 B4DGG1 531 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 TMEM233B4DJY2 109 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 SYT5O00445 386 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 INPPL1O15357 1258 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 INHAP05111 366 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 ADORA3P0DMS8 318 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 GDI1P31150 447 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 OR4D2P58180 307 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 HNRNPKP61978 463 aaKnown RBP eCLIP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 CCDC58Q4VC31 144 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 PRSS55Q6UWB4 352 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 RANBP10Q6VN20 620 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 PIM3Q86V86 326 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 OSTM1Q86WC4 334 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 KLBQ86Z14 1044 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF695Q8IW36 515 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 SKA3Q8IX90 412 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 OR6Q1Q8NGQ2 317 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 ASB12Q8WXK4 309 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 MYLIPQ8WY64 445 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 SMPDL3BQ92485 455 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 RPL10LQ96L21 214 aaKnown RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 FEVQ99581 238 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 P2RY13Q9BPV8 354 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 NUDT9Q9BW91 350 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 XYLT2Q9H1B5 865 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 HRASLS2Q9NWW9 162 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 TEX10Q9NXF1 929 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 MYOM1P52179 1685 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 IGKV6-21A0A0C4DH24 114 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 A0A1W2PRU2 124 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 OR6C6A6NF89 314 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 BRINP1O60477 761 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 CRYZL1O95825 349 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 GATMP50440 423 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 AKR1C2P52895 323 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 DIO3P55073 304 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 BTG1P62324 171 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 CBLL1Q75N03 491 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 MRPL10Q7Z7H8 261 aaKnown RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 CMIPQ8IY22 773 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 C12orf45Q8N5I9 185 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 FAM83FQ8NEG4 500 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 OR5D16Q8NGK9 328 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 OR2T35Q8NGX2 323 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 CNIH3Q8TBE1 160 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 TMEM19Q96HH6 336 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 IGSF21Q96ID5 467 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 UHRF2Q96PU4 802 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 C19orf43Q9BQ61 176 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 NICN1Q9BSH3 213 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 MFFQ9GZY8 342 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 TP63Q9H3D4 680 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-203ENST00000409050 PCDHGA7Q9Y5G6 932 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 CPED1A4D0V7 1026 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 SYT7O43581 403 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 SLC43A1O75387 559 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 ACP2P11117 423 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 TNFSF4P23510 183 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 HNF1BP35680 557 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 AHRP35869 848 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 SPINT3P49223 89 aa5.78□□□□□ -1.48
SCN1A-203ENST00000409050 IDH3GP51553 393 aaPredicted RBP5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms