RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 SOCS2O14508 198 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 CASQ2O14958 399 aaPredicted RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 TPST2O60704 377 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 NKX2-2O95096 273 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 CT45A8P0DMV1 189 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 CT45A9P0DMV2 189 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 ETS2P15036 469 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 PRKACGP22612 351 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 GALNSP34059 522 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 RPS18P62269 152 aaKnown RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 TXNL4AP83876 142 aaKnown RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 HOXC5Q00444 222 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 EIF3IQ13347 325 aaKnown RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 PUM1Q14671 1186 aaKnown RBP eCLIP3.44□□□□□ -1.863e-8■□□□□ 8.3
RTN4-208ENST00000404909 CT45A2Q5DJT8 189 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 MRPL14Q6P1L8 145 aaKnown RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 PAPD4Q6PIY7 484 aaKnown RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 FAM198BQ6UWH4 519 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 SLC29A4Q7RTT9 530 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 TIPARPQ7Z3E1 657 aaKnown RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 COMTD1Q86VU5 262 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 CARM1Q86X55 608 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 ZDHHC13Q8IUH4 622 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 CLIP4Q8N3C7 705 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 OR7G1Q8NGA0 311 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 SDCCAG3Q96C92 435 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 ARSGQ96EG1 525 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 C7orf34Q96L11 122 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 ART5Q96L15 291 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 ZNF184Q99676 751 aaPredicted RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 ZPBPQ9BS86 351 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 LMF2Q9BU23 707 aaKnown RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 NXF5Q9H1B4 397 aaKnown RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 MTHFD2LQ9H903 347 aaPredicted RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 NTN4Q9HB63 628 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 NDUFAF4Q9P032 175 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 CBLCQ9ULV8 474 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 ZNF232Q9UNY5 417 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 CFL2Q9Y281 166 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 SAMHD1Q9Y3Z3 626 aaKnown RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 SDK2Q58EX2 2172 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 LOC400499M0QZD8 3231 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 PRAMEF25A6NGN4 478 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 G3V2T6 193 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 EI24O14681 340 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 KLF7O75840 302 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 CYP7B1O75881 506 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 IGKV1D-16P01601 117 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 CLPSP04118 112 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 IGKV3-11P04433 115 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 PABPC4LP0CB38 370 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 ITGA2P17301 1181 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 CD247P20963 164 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 RRM2P31350 389 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 GCKP35557 465 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 MAP3K8P41279 467 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 MAGEA2P43356 314 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 KCNJ5P48544 419 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 NR0B1P51843 470 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 CDH12P55289 794 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 IL1RL1Q01638 556 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 SPIBQ01892 262 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 KCNC4Q03721 635 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ELOAQ14241 798 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 LARS2Q15031 903 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 TAF11Q15544 211 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 MAPK14Q16539 360 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 IRAK1BP1Q5VVH5 260 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 TBPL2Q6SJ96 375 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 C16orf47Q6ZP98 133 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 MED25Q71SY5 747 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 CPEB2Q7Z5Q1 589 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 GLRX5Q86SX6 157 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 EPHX4Q8IUS5 362 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 LACC1Q8IV20 430 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 C9orf40Q8IXQ3 194 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ZNF619Q8N2I2 560 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 BCORP1Q8N888 145 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 CATSPER1Q8NEC5 780 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 B3GNT7Q8NFL0 401 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 OR1N1Q8NGS0 311 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 MAGEE2Q8TD90 523 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 FKBP10Q96AY3 582 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ZNF354BQ96LW1 612 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 LRFN5Q96NI6 719 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 SLC46A1Q96NT5 459 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 C9orf16Q9BUW7 83 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 DDA1Q9BW61 102 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 PRR14Q9BWN1 585 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 AMBRA1Q9C0C7 1298 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 ZNF350Q9GZX5 532 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 SLC26A1Q9H2B4 701 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 TRIM45Q9H8W5 580 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 REEP1Q9H902 201 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 VNN3Q9NY84 501 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 C19orf25Q9UFG5 118 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 NXT1Q9UKK6 140 aaKnown RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 SLC9A8Q9Y2E8 581 aa3.43□□□□□ -1.86
RTN4-208ENST00000404909 GPR55Q9Y2T6 319 aaPredicted RBP3.43□□□□□ -1.86
RTN4-208ENST00000404909 CFAP47Q6ZTR5 3102 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms