RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 WDR45Q9Y484 360 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 WDFY3Q8IZQ1 3526 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 SOCS6O14544 535 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 ACOT8O14734 319 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 SUV39H1O43463 412 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 FKBP6O75344 327 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 NME6O75414 186 aaPredicted RBP13.16□□□□□ -0.3
SKA1-202ENST00000398452 PGM3O95394 542 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 H6PDO95479 791 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 SERPINA1P01009 418 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 ALPPP05187 535 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 HPGDP15428 266 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 DRD5P21918 477 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 IL12BP29460 328 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 MAN2A2P49641 1150 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 NR0B1P51843 470 aaKnown RBP13.16□□□□□ -0.3
SKA1-202ENST00000398452 PSG6Q00889 435 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 PLCXD2Q0VAA5 305 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 DUSP8Q13202 625 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 ELOAQ14241 798 aaKnown RBP13.16□□□□□ -0.3
SKA1-202ENST00000398452 EBPQ15125 230 aaKnown RBP13.16□□□□□ -0.3
SKA1-202ENST00000398452 ADRM1Q16186 407 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 NNATQ16517 81 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 SYPL1Q16563 259 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 FXNQ16595 210 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 FAM98BQ52LJ0 330 aaKnown RBP13.16□□□□□ -0.3
SKA1-202ENST00000398452 SWT1Q5T5J6 900 aaKnown RBP13.16□□□□□ -0.3
SKA1-202ENST00000398452 PLAG1Q6DJT9 500 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 ZFP1Q6P2D0 407 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 KIRREL2Q6UWL6 708 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 FKBP9P1Q75LS8 142 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 MRGPREQ86SM8 312 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 ARMC8Q8IUR7 673 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 PEX5LQ8IYB4 626 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 ZNF321PQ8N8H1 164 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 ANKFN1Q8N957 763 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 GOLM1Q8NBJ4 401 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 CHDHQ8NE62 594 aaPredicted RBP13.16□□□□□ -0.3
SKA1-202ENST00000398452 C17orf47Q8NEP4 570 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 NFAM1Q8NET5 270 aaPredicted RBP13.16□□□□□ -0.3
SKA1-202ENST00000398452 SLC22A8Q8TCC7 542 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 WDR60Q8WVS4 1066 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 KCNE4Q8WWG9 221 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 PMM1Q92871 262 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 FGF11Q92914 225 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 TP53INP1Q96A56 240 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 BTBD9Q96Q07 612 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 WDR77Q9BQA1 342 aaPredicted RBP13.16□□□□□ -0.3
SKA1-202ENST00000398452 SEMA4CQ9C0C4 833 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 BCL2L10Q9HD36 194 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 MMP25Q9NPA2 562 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 SEC14L3Q9UDX4 400 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 ANAPC2Q9UJX6 822 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 FBXL4Q9UKA2 621 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 BAG5Q9UL15 447 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 AURKCQ9UQB9 309 aa13.16□□□□□ -0.3
SKA1-202ENST00000398452 GPR55Q9Y2T6 319 aaPredicted RBP13.16□□□□□ -0.3
SKA1-202ENST00000398452 FASNP49327 2511 aaKnown RBP13.16□□□□□ -0.3
SKA1-202ENST00000398452 DHRS12A0PJE2 317 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 CDC14CA4D256 554 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 M0QX08 132 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 REM1O75628 298 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 GPIP06744 558 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 LIFP15018 202 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 ETS2P15036 469 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 ATP6V1B2P21281 511 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 ITPKBP27987 946 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 SOX18P35713 384 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 TMED10P49755 219 aaKnown RBP13.15□□□□□ -0.3
SKA1-202ENST00000398452 CHRNB3Q05901 458 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 LARS2Q15031 903 aaKnown RBP13.15□□□□□ -0.3
SKA1-202ENST00000398452 TGIF1Q15583 401 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 GPR68Q15743 365 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 RPS26P11Q5JNZ5 115 aaPredicted RBP13.15□□□□□ -0.3
SKA1-202ENST00000398452 HEPHL1Q6MZM0 1159 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 FIGNL1Q6PIW4 674 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 CCDC80Q76M96 950 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 C9orf40Q8IXQ3 194 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 KBTBD2Q8IY47 623 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 ZNF619Q8N2I2 560 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 SLC5A8Q8N695 610 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 ZSCAN1Q8NBB4 408 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 APCDD1LQ8NCL9 501 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 ZNF248Q8NDW4 579 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 OR52E4Q8NGH9 312 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 PROX1Q92786 737 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 TPD52L3Q96J77 140 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 COL21A1Q96P44 957 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 SDF2Q99470 211 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 TREX2Q9BQ50 279 aaPredicted RBP13.15□□□□□ -0.3
SKA1-202ENST00000398452 HOXD1Q9GZZ0 328 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 MTHFD2LQ9H903 347 aaPredicted RBP13.15□□□□□ -0.3
SKA1-202ENST00000398452 KLHL28Q9NXS3 571 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 IFT52Q9Y366 437 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 MRPS18BQ9Y676 258 aaKnown RBP13.15□□□□□ -0.3
SKA1-202ENST00000398452 SDK2Q58EX2 2172 aa13.15□□□□□ -0.3
SKA1-202ENST00000398452 A0A1W2PQ72 361 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 GXYLT2A0PJZ3 443 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 A8MUI8 341 aa13.14□□□□□ -0.31
SKA1-202ENST00000398452 TERTO14746 1132 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms