RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ZNF354BQ96LW1 612 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 LHPPQ9H008 270 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 C14orf105Q9NVL8 296 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 SIDT1Q9NXL6 827 aaKnown RBP16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 NDUFAF4Q9P032 175 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 PRODH2Q9UF12 536 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 IFT52Q9Y366 437 aa16.96■□□□□ 0.3
CCDC88C-203ENST00000389856 ARRDC5A6NEK1 342 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 FAM86C2PA6NEL3 165 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 TMEM229AB2RXF0 380 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 TNFRSF10AO00220 468 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 TNFRSF11BO00300 401 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 MITFO75030 526 aaPredicted RBP16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 KCNJ5P48544 419 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 OCA2Q04671 838 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 MAD2L1BPQ15013 274 aaPredicted RBP16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 MINDY4Q4G0A6 757 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 GALNT5Q7Z7M9 940 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 SMYD1Q8NB12 490 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 RCBTB1Q8NDN9 531 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 BPIFB6Q8NFQ5 453 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 SLC35A4Q96G79 324 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 ZNF300Q96RE9 604 aaPredicted RBP16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 PINK1Q9BXM7 581 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 MTHFD2LQ9H903 347 aaPredicted RBP16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 LIN28AQ9H9Z2 209 aaKnown RBP16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 LANCL2Q9NS86 450 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 KLHL28Q9NXS3 571 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 ZNF232Q9UNY5 417 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 CFL2Q9Y281 166 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 POFUT2Q9Y2G5 429 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 SH3GLB1Q9Y371 365 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 TMEM184BQ9Y519 407 aaPredicted RBP16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 LYVE1Q9Y5Y7 322 aa16.95■□□□□ 0.3
CCDC88C-203ENST00000389856 SCN2AQ99250 2005 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 ZNF99A8MXY4 864 aaPredicted RBP16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 GUSBP08236 651 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 FGF5P12034 268 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 CD247P20963 164 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 MAOAP21397 527 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 PCMT1P22061 227 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 RRM2P31350 389 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 HMGA2P52926 109 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 SLC35A2P78381 396 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 BTG2P78543 158 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 NFATC3Q12968 1075 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 ILKQ13418 452 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 ERV3-1Q14264 604 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 MAPK11Q15759 364 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 MLIPQ5VWP3 458 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 RALGAPA1Q6GYQ0 2036 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 ANKRD13BQ86YJ7 626 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 PEX5LQ8IYB4 626 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 SLC16A11Q8NCK7 471 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 OR52R1Q8NGF1 315 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 GPR151Q8TDV0 419 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 NR4A3Q92570 626 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 CDS1Q92903 461 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 BARD1Q99728 777 aaKnown RBP16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 CDC6Q99741 560 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 TGIF2Q9GZN2 237 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 TMEM9BQ9NQ34 198 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 ENPP4Q9Y6X5 453 aa16.94■□□□□ 0.3
CCDC88C-203ENST00000389856 SYT5O00445 386 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 STX11O75558 287 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 CHRM4P08173 479 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 ACP2P11117 423 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 RHCEP18577 417 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 AGXTP21549 392 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 SMIM11AP58511 58 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 RAB15P59190 212 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 POU6F2P78424 691 aaPredicted RBP16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 DCDP81605 110 aaKnown RBP16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 E2F1Q01094 437 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 ZFP36L1Q07352 338 aaKnown RBP16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 ZNF267Q14586 743 aaPredicted RBP16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 DUSP5Q16690 384 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 EXOSC6Q5RKV6 272 aaKnown RBP16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 C1orf189Q5VU69 101 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 B3GNT8Q7Z7M8 397 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 OR4C15Q8NGM1 316 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 RORBQ92753 470 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 PIP5K1AQ99755 562 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 LMF2Q9BU23 707 aaKnown RBP16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 CNPPD1Q9BV87 410 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 ARMC7Q9H6L4 198 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 EVA1AQ9H8M9 152 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 ANKRA2Q9H9E1 313 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 PLCXD1Q9NUJ7 323 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 WDR45Q9Y484 360 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 HEMK1Q9Y5R4 338 aaPredicted RBP16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 DSPPQ9NZW4 1301 aa16.93■□□□□ 0.3
CCDC88C-203ENST00000389856 PRAMEF27A3QJZ7 478 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 POLR1CO15160 346 aaPredicted RBP16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 DIRAS1O95057 198 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 NKX2-2O95096 273 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 CBX7O95931 251 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 BCL10O95999 233 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 CT62P0C5K7 136 aa16.92■□□□□ 0.3
CCDC88C-203ENST00000389856 SPTBP11277 2137 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms