RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ESRP2Q9H6T0 727 aaKnown RBP12□□□□□ -0.49
COL6A3-203ENST00000353578 SMPD4Q9NXE4 827 aa12□□□□□ -0.49
COL6A3-203ENST00000353578 FABP7O15540 132 aa12□□□□□ -0.49
COL6A3-203ENST00000353578 FGF4P08620 206 aa12□□□□□ -0.49
COL6A3-203ENST00000353578 CLDN8P56748 225 aa12□□□□□ -0.49
COL6A3-203ENST00000353578 FNDC3BQ53EP0 1204 aaKnown RBP12□□□□□ -0.49
COL6A3-203ENST00000353578 BRF2Q9HAW0 419 aa12□□□□□ -0.49
COL6A3-203ENST00000353578 Q9N2J8 555 aa12□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF701Q9NV72 531 aaPredicted RBP12□□□□□ -0.49
COL6A3-203ENST00000353578 ALPLP05186 524 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 THPOP40225 353 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 PDZD3Q86UT5 571 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 TMEM234Q8WY98 164 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 PRAP1Q96NZ9 151 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 SOHLH2Q9NX45 425 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 JUNDP17535 347 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 SHMT1P34896 483 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 STEAP2Q8NFT2 490 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 ZBTB8AQ96BR9 441 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 HRH4Q9H3N8 390 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 SOX17Q9H6I2 414 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF230Q9UIE0 474 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 TP53BP1Q12888 1972 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 M0R143 59 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 SLC16A6O15403 523 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 TFAP2AP05549 437 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 SPATA31C1P0DKV0 1188 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 CDK5Q00535 292 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 GPR162Q16538 588 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 C1QTNF12Q5T7M4 302 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 FUNDC1Q8IVP5 155 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 TSGA13Q96PP4 275 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 NICN1Q9BSH3 213 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 CPNE6O95741 557 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 RBM39Q14498 530 aaKnown RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 MRIQ9BWK5 157 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 HDHD5Q9BXW7 423 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 WWTR1Q9GZV5 400 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 OR51F1A6NGY5 319 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 F6UZH7 168 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 TSPAN3O60637 253 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 GPR176Q14439 515 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 PLK5Q496M5 336 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 SPANXN4Q5MJ08 99 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 PXDC1Q5TGL8 231 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 TRAM1L1Q8N609 369 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 SIGLECL1Q8N7X8 197 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 OR5W2Q8NH69 310 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 MRPS30Q9NP92 439 aaKnown RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 CD8B2A6NJW9 211 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 TPST2O60704 377 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 CD8BP10966 210 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 MGMTP16455 207 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 TBPP20226 339 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 LSSP48449 732 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 CSNK2A1P68400 391 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 VAMP3Q15836 100 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF852Q6ZMS4 543 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF680Q8NEM1 530 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 CSNK2A3Q8NEV1 391 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 OR9I1Q8NGQ6 314 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 ADIPOR1Q96A54 375 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF629Q9UEG4 869 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 PSPHP78330 225 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 THOC6Q86W42 341 aaKnown RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 OR5AK2Q8NH90 309 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 GPR148Q8TDV2 347 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 TBL1XR1Q9BZK7 514 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 TRAF3IP2O43734 574 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 SYN1P17600 705 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 RAB7AP51149 207 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 CDH8P55286 799 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 FCGRTP55899 365 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 SLC25A11Q02978 314 aaKnown RBP11.99□□□□□ -0.49
COL6A3-203ENST00000353578 GPR50Q13585 617 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 RAB33AQ14088 237 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 OR5D16Q8NGK9 328 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 ENPP4Q9Y6X5 453 aa11.99□□□□□ -0.49
COL6A3-203ENST00000353578 SNRPGP15A8MWD9 76 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 WSCD1Q658N2 575 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 OR4K17Q8NGC6 315 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 OR4D10Q8NGI6 311 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 CRLF2Q9HC73 371 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 NPIPA5A0A0B4J1W7 369 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 RFX2P48378 723 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 MTNR1BP49286 362 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 CRHR2Q13324 411 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 SHFQ7M4L6 423 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 RAET1EQ8TD07 263 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 ASB17Q8WXJ9 295 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 FEVQ99581 238 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 DUS2Q9NX74 493 aaKnown RBP11.98□□□□□ -0.49
COL6A3-203ENST00000353578 ZDHHC3Q9NYG2 299 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 NPFFR2Q9Y5X5 522 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 PLIN4Q96Q06 1357 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 N4BP2Q86UW6 1770 aaPredicted RBP11.98□□□□□ -0.49
COL6A3-203ENST00000353578 FUCA1P04066 466 aa11.98□□□□□ -0.49
COL6A3-203ENST00000353578 RFC3P40938 356 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms