RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CKMT1AP12532 417 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 CBLP22681 906 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 RPL5P46777 297 aaKnown RBP12.44□□□□□ -0.42
HMGB1-202ENST00000339872 RGS8P57771 180 aaPredicted RBP12.44□□□□□ -0.42
HMGB1-202ENST00000339872 ISL1P61371 349 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 ACY1Q03154 408 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 SEC23BQ15437 767 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 PROX2Q3B8N5 592 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 VWA2Q5GFL6 755 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 SATL1Q86VE3 508 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 HOXB13Q92826 284 aaPredicted RBP12.44□□□□□ -0.42
HMGB1-202ENST00000339872 TSLPQ969D9 159 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 VSTM2LQ96N03 204 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 ZNF578Q96N58 590 aaPredicted RBP12.44□□□□□ -0.42
HMGB1-202ENST00000339872 PNO1Q9NRX1 252 aaKnown RBP12.44□□□□□ -0.42
HMGB1-202ENST00000339872 WDFY4Q6ZS81 3184 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 C17orf105B2RV13 164 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 FAAHO00519 579 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 PEX12O00623 359 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 KCNK2O95069 426 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 GASTP01350 101 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 RYKP34925 604 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 MPLP40238 635 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 GSSP48637 474 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 TAS2R41P59536 307 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 RPP38P78345 283 aaKnown RBP12.44□□□□□ -0.42
HMGB1-202ENST00000339872 FUT7Q11130 342 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 MAPK14Q16539 360 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 LIN52Q52LA3 116 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 FOXB2Q5VYV0 432 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 TCEAL6Q6IPX3 200 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 ZNF770Q6IQ21 691 aaPredicted RBP12.44□□□□□ -0.42
HMGB1-202ENST00000339872 QSOX2Q6ZRP7 698 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 APLFQ8IW19 511 aaPredicted RBP12.44□□□□□ -0.42
HMGB1-202ENST00000339872 PRSS58Q8IYP2 241 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 SLC7A13Q8TCU3 470 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 TCEAL3Q969E4 200 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 APOL4Q9BPW4 351 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 PRR14Q9BWN1 585 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 YTHDF1Q9BYJ9 559 aaKnown RBP12.44□□□□□ -0.42
HMGB1-202ENST00000339872 SAP130Q9H0E3 1048 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 OR10A5Q9H207 317 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 ARRDC1-AS1Q9H2J1 176 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 NDRG4Q9ULP0 352 aaKnown RBP12.44□□□□□ -0.42
HMGB1-202ENST00000339872 SRPK3Q9UPE1 567 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 BDP1A6H8Y1 2624 aa12.44□□□□□ -0.42
HMGB1-202ENST00000339872 A0A1W2PRQ8 180 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 CPSF4LA6NMK7 179 aaKnown RBP12.43□□□□□ -0.42
HMGB1-202ENST00000339872 OR10H3O60404 316 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 BRINP1O60477 761 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 OXSR1O95747 527 aaPredicted RBP12.43□□□□□ -0.42
HMGB1-202ENST00000339872 DBIP07108 87 aaKnown RBP12.43□□□□□ -0.42
HMGB1-202ENST00000339872 THBS1P07996 1170 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 CCNYL3P0C7X3 344 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 RPS4Y1P22090 263 aaKnown RBP12.43□□□□□ -0.42
HMGB1-202ENST00000339872 RNF144AP50876 292 aaPredicted RBP12.43□□□□□ -0.42
HMGB1-202ENST00000339872 RPS6KA3P51812 740 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 HOXC5Q00444 222 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 BIKQ13323 160 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 DGCR6Q14129 220 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 NNATQ16517 81 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 EIPR1Q53HC9 387 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 PHF19Q5T6S3 580 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 Q6ZPB1 254 aaPredicted RBP12.43□□□□□ -0.42
HMGB1-202ENST00000339872 ZAR1Q86SH2 424 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 OR4N2Q8NGD1 307 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 C16orf52Q8NHV5 167 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 CNIH3Q8TBE1 160 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 HDAC2Q92769 488 aaKnown RBP12.43□□□□□ -0.42
HMGB1-202ENST00000339872 PITX2Q99697 317 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 MAN2C1Q9NTJ4 1040 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 A0A087WXM4 84 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 TRIM64A6NGJ6 449 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 A8MUA0 341 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 AGXTP21549 392 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 EEF1B2P24534 225 aaKnown RBP12.43□□□□□ -0.42
HMGB1-202ENST00000339872 AVPR2P30518 371 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 GALNSP34059 522 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 DUSP3P51452 185 aaPredicted RBP12.43□□□□□ -0.42
HMGB1-202ENST00000339872 NR1H2P55055 460 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 EEF1A1P68104 462 aaKnown RBP12.43□□□□□ -0.42
HMGB1-202ENST00000339872 NADK2Q4G0N4 442 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 C6orf141Q5SZD1 244 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 NPSR1Q6W5P4 371 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 CLIP3Q96DZ5 547 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 GFM1Q96RP9 751 aaKnown RBP12.43□□□□□ -0.42
HMGB1-202ENST00000339872 FUZQ9BT04 418 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 KCNE5Q9UJ90 142 aa12.43□□□□□ -0.42
HMGB1-202ENST00000339872 DMDP11532 3685 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 IGKV3D-11A0A0A0MRZ8 115 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 SH3PXD2BA1X283 911 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 AP3D1O14617 1153 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 SOX30O94993 753 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 TIAF1O95411 115 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 NID1P14543 1247 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 TUBA4AP68366 448 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 RHAGQ02094 409 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 FLYWCH1Q4VC44 716 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 RBM48Q5RL73 367 aaKnown RBP12.42□□□□□ -0.42
HMGB1-202ENST00000339872 MRPL2Q5T653 305 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms