RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 METTL2AQ96IZ6 378 aaKnown RBP7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 NPFFR1Q9GZQ6 430 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 SIAEQ9HAT2 523 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 DCAF13Q9NV06 445 aaKnown RBP7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 NENFQ9UMX5 172 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 YIPF1Q9Y548 306 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 PCDHB9Q9Y5E1 797 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 NPEPPSL1A6NEC2 478 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 SPATA31C2B4DYI2 1134 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 H6PDO95479 791 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 C22orf31O95567 290 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 A1BGP04217 495 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 SERPINE2P07093 398 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 UBBP0CG47 229 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 INSRRP14616 1297 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 MAP2K6P52564 334 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 CLRN1P58418 232 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 TAS2R31P59538 309 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 HERVK_113P61574 105 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 GABRA6Q16445 453 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 LTC4SQ16873 150 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 SLC5A12Q1EHB4 618 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 PLEKHS1Q5SXH7 462 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 TFAP2DQ7Z6R9 452 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ZNF546Q86UE3 836 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 BATF2Q8N1L9 274 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 CCDC71LQ8N9Z2 235 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 UBAC2Q8NBM4 344 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 OR2G3Q8NGZ4 309 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 HERVK_113Q902F9 699 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ACDQ96AP0 544 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 RSG1Q9BU20 258 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 KCNH6Q9H252 994 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 KCND1Q9NSA2 647 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 SIRT3Q9NTG7 399 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 KPTNQ9Y664 436 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 F5H697 171 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 IL3P08700 152 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 CSF2RAP15509 400 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 CPEP16870 476 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ADRA1DP25100 572 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 EPHA2P29317 976 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ZNF266Q14584 549 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ZNF74Q16587 644 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 GJB7Q6PEY0 223 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 SFTA2Q6UW10 78 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ATXN2LQ8WWM7 1075 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 PTPN18Q99952 460 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 UTP23Q9BRU9 249 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 TMEM208Q9BTX3 173 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 SGK2Q9HBY8 427 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ELOVL2Q9NXB9 296 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 MIOSQ9NXC5 875 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 RCC2Q9P258 522 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 SNX11Q9Y5W9 270 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 PLEKHG2Q9H7P9 1386 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 TRBV23OR9-2A0A075B6M9 112 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 A0A1W2PQ09 198 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 FAM24AA6NFZ4 105 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ACKR2O00590 384 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 TBL1XO60907 577 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 MAFO75444 373 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ARL6IP5O75915 188 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 S100A8P05109 93 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 POU6F2P78424 691 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 MGAT2Q10469 447 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 PDZK1IP1Q13113 114 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 REEP3Q6NUK4 255 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 VASH2Q86V25 355 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 PSTKQ8IV42 348 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ZFP90Q8TF47 636 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ASB17Q8WXJ9 295 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 TSSK3Q96PN8 268 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 APMAPQ9HDC9 416 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ACSS2Q9NR19 701 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 STRAPQ9Y3F4 350 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 PCDHGC4Q9Y5F7 938 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 NPTNQ9Y639 398 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 DISP1Q96F81 1524 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 CLPSL1A2RUU4 121 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 SLC22A3O75751 556 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 MT-ATP6P00846 226 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 S1PR1P21453 382 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 CD82P27701 267 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 GABRB2P47870 512 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 BCAMP50895 628 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 TAGLNQ01995 201 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 OC90Q02509 493 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 MBTPS1Q14703 1052 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ZNF829Q3KNS6 432 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 AMMECR1LQ6DCA0 310 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 CDHR3Q6ZTQ4 885 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 TMEM145Q8NBT3 493 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 OR5AK3PQ8NH89 298 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 UCN3Q969E3 161 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 OR4K3Q96R72 315 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 SYT3Q9BQG1 590 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 RTP3Q9BQQ7 232 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 PARP12Q9H0J9 701 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ELOVL3Q9HB03 270 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms