RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 NSMAFQ92636 917 aa12.35□□□□□ -0.43
NUP54-201ENST00000264883 LRR1Q96L50 414 aa12.35□□□□□ -0.43
NUP54-201ENST00000264883 ZNF582Q96NG8 517 aaPredicted RBP12.35□□□□□ -0.43
NUP54-201ENST00000264883 PKP4Q99569 1192 aa12.35□□□□□ -0.43
NUP54-201ENST00000264883 ARHGAP9Q9BRR9 750 aa12.35□□□□□ -0.43
NUP54-201ENST00000264883 POLR2J3Q9H1A7 115 aaKnown RBP12.35□□□□□ -0.43
NUP54-201ENST00000264883 MARCH5Q9NX47 278 aa12.35□□□□□ -0.43
NUP54-201ENST00000264883 CTSFQ9UBX1 484 aa12.35□□□□□ -0.43
NUP54-201ENST00000264883 AFF4Q9UHB7 1163 aaKnown RBP12.35□□□□□ -0.43
NUP54-201ENST00000264883 CD8B2A6NJW9 211 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 ZNF593O00488 134 aaPredicted RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 SMAD6O43541 496 aaKnown RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 SLC28A2O43868 658 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 OR10H3O60404 316 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 CD8BP10966 210 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 RAB13P51153 203 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 TAP2Q03519 686 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 MAP4K2Q12851 820 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 SLC27A4Q6P1M0 643 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 TRIM40Q6P9F5 258 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 OAFQ86UD1 273 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 PDZD9Q8IXQ8 264 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 CLP1Q92989 425 aaKnown RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 ABHD1Q96SE0 405 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 KLF16Q9BXK1 252 aaPredicted RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 POLDIP3Q9BY77 421 aaKnown RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 NKX6-2Q9C056 277 aaPredicted RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 ACTR6Q9GZN1 396 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 BIN3Q9NQY0 253 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 HCSTQ9UBK5 93 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 MKI67P46013 3256 aaKnown RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 COL4A6Q14031 1691 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 CXorf51AA0A1B0GTR3 108 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 MGAT4DA6NG13 374 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 OR6C65A6NJZ3 312 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 SIGLEC5O15389 551 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 TBL1XO60907 577 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 SOX30O94993 753 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 IGSF6O95976 241 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 IDSP22304 550 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 NFYAP23511 347 aaPredicted RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 ATP5A1P25705 553 aaKnown RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 SERPINA4P29622 427 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 CALCRP30988 508 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 CD79BP40259 229 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 GDI2P50395 445 aaKnown RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 SIGLEC14Q08ET2 396 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 SEC23BQ15437 767 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 TPRG1Q6ZUI0 275 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 TRMT11Q7Z4G4 463 aaKnown RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 ZER1Q7Z7L7 766 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 SAMD12Q8N8I0 201 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 GPR26Q8NDV2 337 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 OR56B4Q8NH76 319 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 OR1S1Q8NH92 325 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 CNOT9Q92600 299 aaKnown RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 INTS12Q96CB8 462 aaKnown RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 RNFT2Q96EX2 444 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 SPATA5L1Q9BVQ7 753 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 GPR62Q9BZJ7 368 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 PITHD1Q9GZP4 211 aaPredicted RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 ZNF768Q9H5H4 540 aaKnown RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 FGF20Q9NP95 211 aaPredicted RBP12.34□□□□□ -0.43
NUP54-201ENST00000264883 GPATCH2Q9NW75 528 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 LRFN2Q9ULH4 789 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 ERVK-19Q9WJR5 959 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 ANGPT4Q9Y264 503 aa12.34□□□□□ -0.43
NUP54-201ENST00000264883 LTBP2Q14767 1821 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 ANKDD1BA6NHY2 528 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 FFAR1O14842 300 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 SDC3O75056 442 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 RP2O75695 350 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 ANXA4P09525 319 aaPredicted RBP12.33□□□□□ -0.44
NUP54-201ENST00000264883 H2AFB1P0C5Y9 115 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 SLC11A1P49279 550 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 MVDP53602 400 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 GAS1P54826 345 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 PFN3P60673 137 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 RAB40BQ12829 278 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 PUM1Q14671 1186 aaKnown RBP eCLIP12.33□□□□□ -0.44
NUP54-201ENST00000264883 HLXQ14774 488 aaPredicted RBP12.33□□□□□ -0.44
NUP54-201ENST00000264883 ZXDCQ2QGD7 858 aaPredicted RBP12.33□□□□□ -0.44
NUP54-201ENST00000264883 RNASE12Q5GAN4 147 aaKnown RBP12.33□□□□□ -0.44
NUP54-201ENST00000264883 B3GNTL1Q67FW5 361 aaPredicted RBP12.33□□□□□ -0.44
NUP54-201ENST00000264883 PYHIN1Q6K0P9 492 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 ZNF852Q6ZMS4 543 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 DEF8Q6ZN54 512 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 SHFQ7M4L6 423 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 DEFB128Q7Z7B8 93 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 ZDHHC1Q8WTX9 485 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 SKA2Q8WVK7 121 aaPredicted RBP12.33□□□□□ -0.44
NUP54-201ENST00000264883 DNTTIP1Q9H147 329 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 RPS6KB2Q9UBS0 482 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 KCND3Q9UK17 655 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 CBLCQ9ULV8 474 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 EDARQ9UNE0 448 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 SLC6A5Q9Y345 797 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 EXOSC1Q9Y3B2 195 aaKnown RBP12.33□□□□□ -0.44
NUP54-201ENST00000264883 IRGMA1A4Y4 181 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 SSX5O60225 188 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms