RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 PGAP2Q9UHJ9 254 aa17.92■□□□□ 0.46
PTPRE-201ENST00000254667 EDIL3O43854 480 aa17.92■□□□□ 0.46
PTPRE-201ENST00000254667 ZNF35P13682 527 aa17.92■□□□□ 0.46
PTPRE-201ENST00000254667 HOXB9P17482 250 aaPredicted RBP17.92■□□□□ 0.46
PTPRE-201ENST00000254667 THBS2P35442 1172 aa17.92■□□□□ 0.46
PTPRE-201ENST00000254667 PHC1P78364 1004 aa17.92■□□□□ 0.46
PTPRE-201ENST00000254667 GGTA1PQ4G0N0 100 aa17.92■□□□□ 0.46
PTPRE-201ENST00000254667 TRNP1Q6NT89 227 aa17.92■□□□□ 0.46
PTPRE-201ENST00000254667 C3P1Q6ZMU1 363 aa17.92■□□□□ 0.46
PTPRE-201ENST00000254667 SSX6Q7RTT6 188 aa17.92■□□□□ 0.46
PTPRE-201ENST00000254667 SLC7A7Q9UM01 511 aa17.92■□□□□ 0.46
PTPRE-201ENST00000254667 HMGN2P05204 90 aaKnown RBP17.91■□□□□ 0.46
PTPRE-201ENST00000254667 HIST1H1TP22492 207 aaPredicted RBP17.91■□□□□ 0.46
PTPRE-201ENST00000254667 UBE2NP61088 152 aaKnown RBP17.91■□□□□ 0.46
PTPRE-201ENST00000254667 GRK1Q15835 563 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 UGT2A3Q6UWM9 527 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 OR2A12Q8NGT7 310 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 ANKRD60Q9BZ19 345 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 GPR83Q9NYM4 423 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 GNAO1P09471 354 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 SPAG16Q8N0X2 631 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 Q8N402 240 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 CASTOR1Q8WTX7 329 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 CCDC120Q96HB5 630 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 MARCH5Q9NX47 278 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 MEGF11A6BM72 1044 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 CENPBD1B2RD01 187 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 SGK494L7N484 410 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 ZNF16P17020 682 aaPredicted RBP17.91■□□□□ 0.46
PTPRE-201ENST00000254667 PRDX3P30048 256 aaKnown RBP17.91■□□□□ 0.46
PTPRE-201ENST00000254667 FXYD6P3P58550 94 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 GALK2Q01415 458 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 ANKK1Q8NFD2 765 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 VAPAQ9P0L0 249 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 CD8B2A6NJW9 211 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 KIAA0355O15063 1070 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 CD8BP10966 210 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 MAP2K3P46734 347 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 DAP3P51398 398 aaKnown RBP17.91■□□□□ 0.46
PTPRE-201ENST00000254667 FAM189BP81408 668 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 TLE3Q04726 772 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 PRRC1Q96M27 445 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 CLMPQ9H6B4 373 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 ZNF701Q9NV72 531 aaPredicted RBP17.91■□□□□ 0.46
PTPRE-201ENST00000254667 SLC9B1P1A6NJY1 282 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 GABRR3A8MPY1 467 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 HIDE1A8MVS5 230 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 M0R3H8 397 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 PCDH17O14917 1159 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 EEF1E1O43324 174 aaKnown RBP17.91■□□□□ 0.46
PTPRE-201ENST00000254667 CER1O95813 267 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 XCR1P46094 333 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 PRDX1Q06830 199 aaKnown RBP17.91■□□□□ 0.46
PTPRE-201ENST00000254667 HMBOX1Q6NT76 420 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 CENPSQ8N2Z9 138 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 OR5K2Q8NHB8 316 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 LRRC20Q8TCA0 184 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 SAMD8Q96LT4 415 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 SACM1LQ9NTJ5 587 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 TBCCD1Q9NVR7 557 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 NAALAD2Q9Y3Q0 740 aa17.91■□□□□ 0.46
PTPRE-201ENST00000254667 C4AP0C0L4 1744 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 FOXE1O00358 373 aaPredicted RBP17.9■□□□□ 0.46
PTPRE-201ENST00000254667 HTR3AP46098 478 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 RAB11BQ15907 218 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 HSF5Q4G112 596 aaPredicted RBP17.9■□□□□ 0.46
PTPRE-201ENST00000254667 KCTD11Q693B1 232 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 TMEM239Q8WW34 195 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 ACSS1Q9NUB1 689 aaPredicted RBP17.9■□□□□ 0.46
PTPRE-201ENST00000254667 OBP2AQ9NY56 170 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 HCSTQ9UBK5 93 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 C6orf132Q5T0Z8 1188 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 TLDC1Q6P9B6 456 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 GDPGP1Q6ZNW5 385 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 PNPLA1Q8N8W4 532 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 IL17RCQ8NAC3 791 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 NT5C3BQ969T7 300 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 LMF2Q9BU23 707 aaKnown RBP17.9■□□□□ 0.46
PTPRE-201ENST00000254667 IRF2BPLQ9H1B7 796 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 FN3KQ9H479 309 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 MYH7P12883 1935 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.9■□□□□ 0.46
PTPRE-201ENST00000254667 ART1P52961 327 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 MS4A2Q01362 244 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 DCST2Q5T1A1 773 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 ZNF700Q9H0M5 742 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 UCKL1Q9NWZ5 548 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 VNN2O95498 520 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 FGL2Q14314 439 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 EEF1A1P5Q5VTE0 462 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 SLC6A16Q9GZN6 736 aa17.9■□□□□ 0.46
PTPRE-201ENST00000254667 SRPX2O60687 465 aaPredicted RBP17.89■□□□□ 0.45
PTPRE-201ENST00000254667 PPP1R3DO95685 299 aa17.89■□□□□ 0.45
PTPRE-201ENST00000254667 RAB3BP20337 219 aa17.89■□□□□ 0.45
PTPRE-201ENST00000254667 GRPRP30550 384 aa17.89■□□□□ 0.45
PTPRE-201ENST00000254667 MGAT3Q09327 533 aa17.89■□□□□ 0.45
PTPRE-201ENST00000254667 TUBB3Q13509 450 aa17.89■□□□□ 0.45
PTPRE-201ENST00000254667 PIN1Q13526 163 aaPredicted RBP17.89■□□□□ 0.45
PTPRE-201ENST00000254667 TAS2R8Q9NYW2 309 aa17.89■□□□□ 0.45
PTPRE-201ENST00000254667 MITFO75030 526 aaPredicted RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms