RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 AMZ1Q400G9 498 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 CDC73Q6P1J9 531 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 SHQ1Q6PI26 577 aaKnown RBP16.05■□□□□ 0.16
PHGDH-234ENST00000642041 OR2L13Q8N349 312 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 GALNT4Q8N4A0 578 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 CBR4Q8N4T8 237 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 AMER3Q8N944 861 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 CDRT4Q8N9R6 151 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 SUN3Q8TAQ9 357 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 TMBIM1Q969X1 311 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 RBM18Q96H35 190 aaKnown RBP16.05■□□□□ 0.16
PHGDH-234ENST00000642041 SLC41A2Q96JW4 573 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 ZNF570Q96NI8 536 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 STACQ99469 402 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 EPYCQ99645 322 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 SLAMF7Q9NQ25 335 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 IRAK4Q9NWZ3 460 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 PDP2Q9P2J9 529 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 C19orf53Q9UNZ5 99 aaPredicted RBP16.05■□□□□ 0.16
PHGDH-234ENST00000642041 USP22Q9UPT9 525 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 IFT52Q9Y366 437 aa16.05■□□□□ 0.16
PHGDH-234ENST00000642041 NF1P21359 2839 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 APCP25054 2843 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 WIPF3A6NGB9 483 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 HMGN4O00479 90 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 TNFAIP8O95379 198 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 CPNE6O95741 557 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 IFNW1P05000 195 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 RHCEP18577 417 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 CDK9P50750 372 aaKnown RBP16.04■□□□□ 0.16
PHGDH-234ENST00000642041 MAP4K2Q12851 820 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 MERTKQ12866 999 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 DEFB109BQ30KR1 87 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 AP1ARQ63HQ0 302 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 KRT80Q6KB66 452 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 TCTN3Q6NUS6 607 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 ENPP6Q6UWR7 440 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 KBTBD2Q8IY47 623 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 ST13P4Q8IZP2 240 aaPredicted RBP16.04■□□□□ 0.16
PHGDH-234ENST00000642041 ARHGEF39Q8N4T4 335 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 ZNF555Q8NEP9 628 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 NFKBIDQ8NI38 313 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 SLC38A5Q8WUX1 472 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 HSH2DQ96JZ2 352 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 FCRL4Q96PJ5 515 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 MACROD1Q9BQ69 325 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 ANKRD60Q9BZ19 345 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 GABARAPL1Q9H0R8 117 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 OR51I1Q9H343 314 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 DUSP22Q9NRW4 184 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 KLHL28Q9NXS3 571 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 TRPC4Q9UBN4 977 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 ZNF232Q9UNY5 417 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 CFL2Q9Y281 166 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 SLC9A8Q9Y2E8 581 aa16.04■□□□□ 0.16
PHGDH-234ENST00000642041 WASHC1A8K0Z3 465 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 SYT5O00445 386 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 ACOX3O15254 700 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 ZNF749O43361 778 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 B4GAT1O43505 415 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 RAD1O60671 282 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 B3GALT4O96024 378 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 HMGN2P05204 90 aaKnown RBP16.03■□□□□ 0.16
PHGDH-234ENST00000642041 ANXA8P13928 327 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 NELFEP18615 380 aaKnown RBP16.03■□□□□ 0.16
PHGDH-234ENST00000642041 EFNA1P20827 205 aaPredicted RBP16.03■□□□□ 0.16
PHGDH-234ENST00000642041 GRNP28799 593 aaKnown RBP16.03■□□□□ 0.16
PHGDH-234ENST00000642041 CD1CP29017 333 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 FEN1P39748 380 aaKnown RBP16.03■□□□□ 0.16
PHGDH-234ENST00000642041 GABRA4P48169 554 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 CHN2P52757 468 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 GFERP55789 205 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 TRA2AQ13595 282 aaKnown RBP eCLIP16.03■□□□□ 0.16
PHGDH-234ENST00000642041 PDK3Q15120 406 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 ZNHIT3Q15649 155 aaPredicted RBP16.03■□□□□ 0.16
PHGDH-234ENST00000642041 NHSL2Q5HYW2 709 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 COX20Q5RI15 118 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 STK32CQ86UX6 486 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 HORMAD2Q8N7B1 307 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 PIK3C3Q8NEB9 887 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 TOR1AIP2Q8NFQ8 470 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 OR5AK3PQ8NH89 298 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 CPT1CQ8TCG5 803 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 SPPL2AQ8TCT8 520 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 XAGE5Q8WWM1 108 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 TFAP2CQ92754 450 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 TPD52L3Q96J77 140 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 ZNF354BQ96LW1 612 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 NDC1Q9BTX1 674 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 MTHFD2LQ9H903 347 aaPredicted RBP16.03■□□□□ 0.16
PHGDH-234ENST00000642041 FAM60AQ9NP50 221 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 RYDENQ9NUL5 291 aaKnown RBP16.03■□□□□ 0.16
PHGDH-234ENST00000642041 SEC14L3Q9UDX4 400 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 SLC13A4Q9UKG4 626 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 HSPE1-MOB4S4R3N1 261 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 SHANK1Q9Y566 2161 aa16.03■□□□□ 0.16
PHGDH-234ENST00000642041 ARRDC5A6NEK1 342 aa16.02■□□□□ 0.16
PHGDH-234ENST00000642041 SAC3D1A6NKF1 404 aa16.02■□□□□ 0.16
PHGDH-234ENST00000642041 TTLL8A6PVC2 850 aa16.02■□□□□ 0.16
PHGDH-234ENST00000642041 C4orf51C9J302 202 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms