RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 L3HYPDHQ96EM0 354 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 VSTM2LQ96N03 204 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 TMEM237Q96Q45 408 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 HBEGFQ99075 208 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 TUBA1CQ9BQE3 449 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 LIME1Q9H400 295 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 TAS2R10Q9NYW0 307 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 TAS2R9Q9NYW1 312 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 TMEM216Q9P0N5 145 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 NAV3Q8IVL0 2385 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 H3BQF6 201 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 RAF1P04049 648 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 GSTA1P08263 222 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 IL12BP29460 328 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 TIA1P31483 386 aaKnown RBP eCLIP16.73■□□□□ 0.27
CLN3-241ENST00000635861 MPIP34949 423 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 PCYT1AP49585 367 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 PRKAA2P54646 552 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 BCL2A1Q16548 175 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 FBXW10Q5XX13 1052 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 DESI1Q6ICB0 168 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 TRMT10CQ7L0Y3 403 aaKnown RBP16.73■□□□□ 0.27
CLN3-241ENST00000635861 TRIM42Q8IWZ5 723 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 FAM9CQ8IZT9 166 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 C11orf24Q96F05 449 aaPredicted RBP16.73■□□□□ 0.27
CLN3-241ENST00000635861 DACH2Q96NX9 599 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 ACPTQ9BZG2 426 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 SLC35C2Q9NQQ7 365 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 CLCF1Q9UBD9 225 aa16.73■□□□□ 0.27
CLN3-241ENST00000635861 DLX3O60479 287 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 COQ9O75208 318 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 FOSL1P15407 271 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 KLK2P20151 261 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 SLCO1A2P46721 670 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 DIO3P55073 304 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 RAE1P78406 368 aaKnown RBP16.72■□□□□ 0.27
CLN3-241ENST00000635861 TCHHL1Q5QJ38 904 aaPredicted RBP16.72■□□□□ 0.27
CLN3-241ENST00000635861 OR9A2Q8NGT5 310 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 C16orf78Q8WTQ4 265 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 CCDC126Q96EE4 140 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 ADOQ96SZ5 270 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 RBM24Q9BX46 236 aaKnown RBP16.72■□□□□ 0.27
CLN3-241ENST00000635861 FOLH1BQ9HBA9 442 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 SENP1Q9P0U3 644 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 RAB21Q9UL25 225 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 PLEKHA6Q9Y2H5 1048 aa16.72■□□□□ 0.27
CLN3-241ENST00000635861 WBP11Q9Y2W2 641 aaKnown RBP16.72■□□□□ 0.27
CLN3-241ENST00000635861 A0A087WV62 115 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 C2orf72A6NCS6 295 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 CLCA1A8K7I4 914 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 HCRTR2O43614 444 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 CRHP06850 196 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 ZNF708P17019 499 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 GCAP28676 217 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 LHX2P50458 406 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 FAM180BQ6P0A1 224 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 LARP4Q71RC2 724 aaKnown RBP eCLIP16.71■□□□□ 0.27
CLN3-241ENST00000635861 HDXQ7Z353 690 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 UHMK1Q8TAS1 419 aaKnown RBP16.71■□□□□ 0.27
CLN3-241ENST00000635861 EXOSC8Q96B26 276 aaKnown RBP16.71■□□□□ 0.27
CLN3-241ENST00000635861 SFXN2Q96NB2 322 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 YIPF4Q9BSR8 244 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 PARD6BQ9BYG5 372 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 DKKL1Q9UK85 242 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 GRID1Q9ULK0 1009 aa16.71■□□□□ 0.27
CLN3-241ENST00000635861 IFI6P09912 130 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 GRK2P25098 689 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 CPA2P48052 419 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 AGFG1P52594 562 aaKnown RBP16.7■□□□□ 0.26
CLN3-241ENST00000635861 DSCR4P56555 118 aaPredicted RBP16.7■□□□□ 0.26
CLN3-241ENST00000635861 CLDN18P56856 261 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 CORO7P57737 925 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 VSNL1P62760 191 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 ZNF763Q0D2J5 394 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 GANABQ14697 944 aaKnown RBP16.7■□□□□ 0.26
CLN3-241ENST00000635861 OR2A2Q6IF42 318 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 FAM76AQ8TAV0 307 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 RDH11Q8TC12 318 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 SMPDL3BQ92485 455 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 KAT2AQ92830 837 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 APIPQ96GX9 242 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 BBS4Q96RK4 519 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 TAS2R7Q9NYW3 318 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 MYO1GB0I1T2 1018 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 LINC01387J3KSC0 135 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 PLOD2O00469 737 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 ATE1O95260 518 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 CHN1P15882 459 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 DDCP20711 480 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 DPP4P27487 766 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 GAS1P54826 345 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 EEFSECP57772 596 aaKnown RBP16.7■□□□□ 0.26
CLN3-241ENST00000635861 SRYQ05066 204 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 FOXF2Q12947 444 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 KEAP1Q14145 624 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 CYP27C1Q4G0S4 372 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 NPSR1Q6W5P4 371 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 GRAMD2AQ8IUY3 354 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 LINC01560Q8TB33 94 aa16.7■□□□□ 0.26
CLN3-241ENST00000635861 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.7■□□□□ 0.265e-8■■■■■ 65.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms