RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 NCEH1Q6PIU2 408 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 ZNF852Q6ZMS4 543 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 KANSL1Q7Z3B3 1105 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 ZNF485Q8NCK3 441 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 BVESQ8NE79 360 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 SCARB1Q8WTV0 552 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 APOBEC4Q8WW27 367 aaKnown RBP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 BTBD1Q9H0C5 482 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 TTYH1Q9H313 450 aaPredicted RBP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 REEP4Q9H6H4 257 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 DUX4Q9UBX2 424 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 MAP4K5Q9Y4K4 846 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 TMEM265A0A087WTH1 108 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 C2orf78A6NCI8 922 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 EPOPA6NHQ4 379 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 OR6C65A6NJZ3 312 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 C5orf58C9J3I9 102 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 H0YIV9 168 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 L7N2F9 121 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 GAPDHSO14556 408 aaPredicted RBP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 PRRG1O14668 218 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 PDCD5O14737 125 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 NME6O75414 186 aaPredicted RBP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 RECKO95980 971 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 HRGP04196 525 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 IGFBP4P22692 258 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 TIA1P31483 386 aaKnown RBP eCLIP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 NSG1P42857 185 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 SLC1A3P43003 542 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 PLXNA3P51805 1871 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 BLVRAP53004 296 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 ERVFC1P60507 584 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 EFNB1P98172 346 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 DDX39BQ13838 428 aaKnown RBP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 PUM1Q14671 1186 aaKnown RBP eCLIP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 GRIN2CQ14957 1233 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 TCTE1Q5JU00 501 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 LYPD4Q6UWN0 246 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 NLRC3Q7RTR2 1065 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 TAS1R1Q7RTX1 841 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 KLHL36Q8N4N3 616 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 IQCF1Q8N6M8 205 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 MOSPD2Q8NHP6 518 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 SPPL3Q8TCT6 385 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 AUTS2Q8WXX7 1259 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 HSD17B8Q92506 261 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 ATOH1Q92858 354 aaPredicted RBP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 FGF11Q92914 225 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 RFKQ969G6 155 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 MYEOVQ96EZ4 313 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 SUSD3Q96L08 255 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 MTERF1Q99551 399 aaKnown RBP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 NPAS1Q99742 590 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 SPATA5L1Q9BVQ7 753 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 METTL17Q9H7H0 456 aaPredicted RBP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 MRPL17Q9NRX2 175 aaKnown RBP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 ING1Q9UK53 422 aaPredicted RBP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 PCDHB9Q9Y5E1 797 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 MYO9BQ13459 2157 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 CHD5Q8TDI0 1954 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 SCN8AQ9UQD0 1980 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 FAM25EA8MYX2 175 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 HNRNPCL2B2RXH8 293 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 H0YC42 278 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 PRAMEF4O60810 478 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 PEX14O75381 377 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 CLDN11O75508 207 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 RGS9O75916 674 aaPredicted RBP10.18□□□□□ -0.78
UPF3A-212ENST00000619079 SOX30O94993 753 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 C6orf47O95873 294 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 TBX18O95935 607 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 TFPIP10646 304 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 TYRP14679 529 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 CELP19835 753 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 GSTM3P21266 225 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 CALCRP30988 508 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 CASP9P55211 416 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 RAE1P78406 368 aaKnown RBP10.18□□□□□ -0.78
UPF3A-212ENST00000619079 CDK5Q00535 292 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 ETFDHQ16134 617 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 SLC5A12Q1EHB4 618 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 SLC36A2Q495M3 483 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 PRAMEF9Q5VWM5 478 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 TCTN3Q6NUS6 607 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 Q7L0L9 218 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 NAXDQ8IW45 347 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 GPR135Q8IZ08 494 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 CFAP52Q8N1V2 620 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 NXPE1Q8N323 547 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 SAMD12Q8N8I0 201 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 OR52N1Q8NH53 320 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 ASB11Q8WXH4 323 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 EID2BQ96D98 161 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 FN3KQ9H479 309 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 SAV1Q9H4B6 383 aaPredicted RBP10.18□□□□□ -0.78
UPF3A-212ENST00000619079 CCSER2Q9H7U1 834 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 ZFYVE1Q9HBF4 777 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 TMEM5Q9Y2B1 443 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 SHISA3A0PJX4 238 aa10.18□□□□□ -0.78
UPF3A-212ENST00000619079 MPTX1A8MV57 137 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms