RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CCNJQ5T5M9 372 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 FIGNL1Q6PIW4 674 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 DEF8Q6ZN54 512 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 PPP1R3BQ86XI6 285 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 VRK2Q86Y07 508 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 RBM45Q8IUH3 476 aaKnown RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 TMEM151BQ8IW70 566 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 DHRSXQ8N5I4 330 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 SLC38A9Q8NBW4 561 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 CHDHQ8NE62 594 aaPredicted RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 CYGBQ8WWM9 190 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 TFAP2CQ92754 450 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 ZG16BQ96DA0 208 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 NRBF2Q96F24 287 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 NR1H4Q96RI1 486 aaPredicted RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 SDF2Q99470 211 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 PIP5K1AQ99755 562 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 CTRCQ99895 268 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 WFDC6Q9BQY6 131 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 LMF2Q9BU23 707 aaKnown RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 OR10A5Q9H207 317 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 SOX17Q9H6I2 414 aaPredicted RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 DUSP22Q9NRW4 184 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 FBXO34Q9NWN3 711 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 UBAP1Q9NZ09 502 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 PDP1Q9P0J1 537 aaPredicted RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 CTSFQ9UBX1 484 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 MKLN1Q9UL63 735 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 SATB2Q9UPW6 733 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 FAM32AQ9Y421 112 aaKnown RBP9.78□□□□□ -0.84
SS18-217ENST00000580958 WDR45Q9Y484 360 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 PCDHGB3Q9Y5G1 929 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 LYVE1Q9Y5Y7 322 aa9.78□□□□□ -0.84
SS18-217ENST00000580958 VPS13AQ96RL7 3174 aa9.77□□□□□ -0.84
SS18-217ENST00000580958 PCNX2A6NKB5 2137 aa9.77□□□□□ -0.84
SS18-217ENST00000580958 HEATR5AQ86XA9 2040 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 NPIPA5A0A0B4J1W7 369 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 TCRBV16S1A1N1A0A5B0 115 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 NPIPA7E9PJI5 369 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 PRAMEF2O60811 474 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 AK1P00568 194 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 ALBP02768 609 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 HBQ1P09105 142 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 ZNF806P0C7X5 589 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 NPIPA8P0DM63 369 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 FGF5P12034 268 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 CAPGP40121 348 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 DAPP51397 102 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 ARHGDIAP52565 204 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 SPEM2Q0P670 501 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 GANABQ14697 944 aaKnown RBP9.77□□□□□ -0.85
SS18-217ENST00000580958 ZNHIT3Q15649 155 aaPredicted RBP9.77□□□□□ -0.85
SS18-217ENST00000580958 EXOC3L2Q2M3D2 409 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 NKAIN1Q4KMZ8 207 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 CCDC157Q569K6 752 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 DHRS4L2Q6PKH6 230 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 UGT2A3Q6UWM9 527 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 NPSR1Q6W5P4 371 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 ZNF605Q86T29 641 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 NAXDQ8IW45 347 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 ZNF619Q8N2I2 560 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 ZNF615Q8N8J6 731 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 SUMF1Q8NBK3 374 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 AGBL5Q8NDL9 886 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 OR4C15Q8NGM1 316 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 OR52P1PQ8NH57 321 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 PTPMT1Q8WUK0 201 aaPredicted RBP9.77□□□□□ -0.85
SS18-217ENST00000580958 RMND5BQ96G75 393 aaPredicted RBP9.77□□□□□ -0.85
SS18-217ENST00000580958 FBXL20Q96IG2 436 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 VSTM2LQ96N03 204 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 ZNF578Q96N58 590 aaPredicted RBP9.77□□□□□ -0.85
SS18-217ENST00000580958 MBOAT4Q96T53 435 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 ARHGDIGQ99819 225 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 EDEM2Q9BV94 578 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 ITPAQ9BY32 194 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 VN1R1Q9GZP7 353 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 ZNF350Q9GZX5 532 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 TOR3AQ9H497 397 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 TRIM45Q9H8W5 580 aaPredicted RBP9.77□□□□□ -0.85
SS18-217ENST00000580958 MTHFD2LQ9H903 347 aaPredicted RBP9.77□□□□□ -0.85
SS18-217ENST00000580958 CACYBPQ9HB71 228 aaKnown RBP9.77□□□□□ -0.85
SS18-217ENST00000580958 TMEM9BQ9NQ34 198 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 RXFP3Q9NSD7 469 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 RHCGQ9UBD6 479 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 SLC13A4Q9UKG4 626 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 MKL2Q9ULH7 1088 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 ZNF443Q9Y2A4 671 aaPredicted RBP9.77□□□□□ -0.85
SS18-217ENST00000580958 DTX4Q9Y2E6 619 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 SLC9A8Q9Y2E8 581 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 HCN4Q9Y3Q4 1203 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 PCDHGB5Q9Y5G0 923 aa9.77□□□□□ -0.85
SS18-217ENST00000580958 CENPVL1A0A0U1RR11 272 aa9.76□□□□□ -0.85
SS18-217ENST00000580958 PRR33A8MZF0 331 aa9.76□□□□□ -0.85
SS18-217ENST00000580958 TNFRSF10AO00220 468 aa9.76□□□□□ -0.85
SS18-217ENST00000580958 SYT5O00445 386 aa9.76□□□□□ -0.85
SS18-217ENST00000580958 FRS3O43559 492 aa9.76□□□□□ -0.85
SS18-217ENST00000580958 GDF9O60383 454 aa9.76□□□□□ -0.85
SS18-217ENST00000580958 GFRA3O60609 400 aa9.76□□□□□ -0.85
SS18-217ENST00000580958 MITFO75030 526 aaPredicted RBP9.76□□□□□ -0.85
SS18-217ENST00000580958 STX11O75558 287 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms