RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ZNF461Q8TAF7 563 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 LKAAEAR1Q8TD35 194 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 LRRC46Q96FV0 321 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 TRMT2BQ96GJ1 504 aaKnown RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 MTG2Q9H4K7 406 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 PPP1R3EQ9H7J1 279 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 ZFYVE1Q9HBF4 777 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 CUEDC1Q9NWM3 386 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 MBD2Q9UBB5 411 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 A0A1W2PPK0 400 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 OR6C74A6NCV1 312 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SGK494L7N484 410 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 BPIP17213 487 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 MAOBP27338 520 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SOX18P35713 384 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 STAT5AP42229 794 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 AGFG1P52594 562 aaKnown RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 MC2RQ01718 297 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SLC3A1Q07837 685 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 NAE1Q13564 534 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 CDKN3Q16667 212 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 ZNF852Q6ZMS4 543 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 MSANTD1Q6ZTZ1 278 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 FGD2Q7Z6J4 655 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 IQCHQ86VS3 1027 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SIAH3Q8IW03 269 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 KRT78Q8N1N4 520 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 PTP4A1Q93096 173 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 RPS10-NUDT3A0A1W2PQS6 291 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 GNB5O14775 395 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 PI15O43692 258 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SLC28A2O43868 658 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SOD2P04179 222 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 JUPP14923 745 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 FOSL1P15407 271 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 CPEP16870 476 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SLC6A1P30531 599 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 MLLT1Q03111 559 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 CEACAM20Q6UY09 585 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SPRED2Q7Z698 418 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SAMD11Q96NU1 681 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 OSGEPL1Q9H4B0 414 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 LHX3Q9UBR4 397 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 EXOSC1Q9Y3B2 195 aaKnown RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 PCDHGA9Q9Y5G4 932 aaKnown RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 PDE4DIPQ5VU43 2346 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SCAMP2O15127 329 aaKnown RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 KDELR3O43731 214 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 LANCL1O43813 399 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 FZD6O60353 706 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 PRMT3O60678 531 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 BUD31P41223 144 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 PIN1Q13526 163 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 ZNF630Q2M218 657 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SPIN4Q56A73 249 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 ATXN7L2Q5T6C5 722 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 TMEM88Q6PEY1 159 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 LRRC28Q86X40 367 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 ADGRG2Q8IZP9 1017 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 OR4F15Q8NGB8 312 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 TRMT10AQ8TBZ6 339 aaKnown RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 TNFAIP8L1Q8WVP5 186 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 XAGE5Q8WWM1 108 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 OVCA2Q8WZ82 227 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 KAT2AQ92830 837 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 FCRL1Q96LA6 429 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 ATF6BQ99941 703 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 GPN1Q9HCN4 374 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-212ENST00000574799 THSD1Q9NS62 852 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 YIPF1Q9Y548 306 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 PIKFYVEQ9Y2I7 2098 aa9.03□□□□□ -0.96
CCDC40-212ENST00000574799 SSX5O60225 188 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 PTPN6P29350 595 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 CORO1AP31146 461 aaKnown RBP9.02□□□□□ -0.96
CCDC40-212ENST00000574799 SLC11A2P49281 568 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 PRKAG1P54619 331 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 HBA1P69905 142 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 CTAG1AP78358 180 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 SYTL3Q4VX76 610 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 PYHIN1Q6K0P9 492 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 GAREM2Q75VX8 874 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 ACOT12Q8WYK0 555 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 TOX2Q96NM4 488 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 IFT27Q9BW83 186 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 DLL4Q9NR61 685 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 ASIC5Q9NY37 505 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 KIF25Q9UIL4 384 aa9.02□□□□□ -0.96
CCDC40-212ENST00000574799 NUP210Q8TEM1 1887 aaPredicted RBP9.02□□□□□ -0.96
CCDC40-212ENST00000574799 A0A1W2PRB8 838 aa9.02□□□□□ -0.97
CCDC40-212ENST00000574799 SLC22A23A1A5C7 686 aa9.02□□□□□ -0.97
CCDC40-212ENST00000574799 LRRN3E7EW58 273 aa9.02□□□□□ -0.97
CCDC40-212ENST00000574799 PIP5K1CO60331 668 aa9.02□□□□□ -0.97
CCDC40-212ENST00000574799 SDC3O75056 442 aa9.02□□□□□ -0.97
CCDC40-212ENST00000574799 NR2F1P10589 423 aa9.02□□□□□ -0.97
CCDC40-212ENST00000574799 SNRPGP62308 76 aaKnown RBP9.02□□□□□ -0.97
CCDC40-212ENST00000574799 ST3GAL2Q16842 350 aa9.02□□□□□ -0.97
CCDC40-212ENST00000574799 ARHGAP15Q53QZ3 475 aa9.02□□□□□ -0.97
CCDC40-212ENST00000574799 SLC36A4Q6YBV0 504 aa9.02□□□□□ -0.97
CCDC40-212ENST00000574799 QSOX2Q6ZRP7 698 aa9.02□□□□□ -0.97
CCDC40-212ENST00000574799 LRRC70Q7Z2Q7 622 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms