RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 OMA1Q96E52 524 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 C11orf24Q96F05 449 aaPredicted RBP6.11□□□□□ -1.43
VPS53-213ENST00000572334 RMND5BQ96G75 393 aaPredicted RBP6.11□□□□□ -1.43
VPS53-213ENST00000572334 LCORQ96JN0 433 aaPredicted RBP6.11□□□□□ -1.43
VPS53-213ENST00000572334 ALPK1Q96QP1 1244 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 UCN2Q96RP3 112 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 TRIB1Q96RU8 372 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 HBEGFQ99075 208 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 TUBA1CQ9BQE3 449 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 OR2B2Q9GZK3 357 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 RAB17Q9H0T7 212 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 VPS11Q9H270 941 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 CDC42EP4Q9H3Q1 356 aaKnown RBP6.11□□□□□ -1.43
VPS53-213ENST00000572334 CALHM2Q9HA72 323 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 WDR41Q9HAD4 459 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 EHD3Q9NZN3 535 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 NDUFA13Q9P0J0 144 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 CLCF1Q9UBD9 225 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 DMGDHQ9UI17 866 aaKnown RBP6.11□□□□□ -1.43
VPS53-213ENST00000572334 SCOCQ9UIL1 159 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 FOXD3Q9UJU5 478 aaPredicted RBP6.11□□□□□ -1.43
VPS53-213ENST00000572334 FBXL2Q9UKC9 423 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 CAMK2AQ9UQM7 478 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 PLLPQ9Y342 182 aa6.11□□□□□ -1.43
VPS53-213ENST00000572334 CUBNO60494 3623 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 C1orf226A1L170 272 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 A8MT66 165 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 SIAH2O43255 324 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 ZIC3O60481 467 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 TSPAN2O60636 221 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 TNFSF13O75888 250 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 OR4F21O95013 312 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 RCBTB2O95199 551 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 IL18BPO95998 194 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 ACTL6AO96019 429 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 IL2RAP01589 272 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 HRGP04196 525 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 RPSAP08865 295 aaKnown RBP6.1□□□□□ -1.43
VPS53-213ENST00000572334 PCSK2P16519 638 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 DRD5P21918 477 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 HOXC12P31275 282 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 OPRM1P35372 400 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 HSD17B3P37058 310 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 PPICP45877 212 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 MASP1P48740 699 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 STARP49675 285 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 TMED10P49755 219 aaKnown RBP6.1□□□□□ -1.43
VPS53-213ENST00000572334 LHX2P50458 406 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 MAPK12P53778 367 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 CLDN15P56746 228 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 CLDN18P56856 261 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 NRG3P56975 720 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 B3GALT5-AS1P59052 145 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 PPP2R2AP63151 447 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 ELF3P78545 371 aaPredicted RBP6.1□□□□□ -1.43
VPS53-213ENST00000572334 SORDQ00796 357 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 HMGCS1Q01581 520 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 KPNB1Q14974 876 aaKnown RBP6.1□□□□□ -1.43
VPS53-213ENST00000572334 UAP1Q16222 522 aaPredicted RBP6.1□□□□□ -1.43
VPS53-213ENST00000572334 DEFB113Q30KQ7 82 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 UNC50Q53HI1 259 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 SGO1Q5FBB7 561 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 C10orf62Q5T681 223 aaPredicted RBP6.1□□□□□ -1.43
VPS53-213ENST00000572334 HLA-DQA1Q5Y7H0 255 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 SLC30A6Q6NXT4 461 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 KLC3Q6P597 504 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 NUP54Q7Z3B4 507 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 MILR1Q7Z6M3 343 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 C1orf52Q8N6N3 182 aaKnown RBP6.1□□□□□ -1.43
VPS53-213ENST00000572334 NOA1Q8NC60 698 aaKnown RBP6.1□□□□□ -1.43
VPS53-213ENST00000572334 WFDC11Q8NEX6 87 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 OR52R1Q8NGF1 315 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 OR1J4Q8NGS1 313 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 ZNF675Q8TD23 568 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 DCAKDQ8WVC6 231 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 HSPBAP1Q96EW2 488 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 CHMP6Q96FZ7 201 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 VSTM2LQ96N03 204 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 SMR3AQ99954 134 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 OSBPL11Q9BXB4 747 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 RTN4RQ9BZR6 473 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 BRINP2Q9C0B6 783 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 METTL7AQ9H8H3 244 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 BRF2Q9HAW0 419 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 SERHLQ9NQF3 203 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 MTRF1LQ9UGC7 380 aaKnown RBP6.1□□□□□ -1.43
VPS53-213ENST00000572334 TRPS1Q9UHF7 1281 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 SLC12A4Q9UP95 1085 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 MAPRE3Q9UPY8 281 aa6.1□□□□□ -1.43
VPS53-213ENST00000572334 EXO1Q9UQ84 846 aaKnown RBP6.1□□□□□ -1.43
VPS53-213ENST00000572334 GPR55Q9Y2T6 319 aaPredicted RBP6.1□□□□□ -1.43
VPS53-213ENST00000572334 SONP18583 2426 aaKnown RBP6.09□□□□□ -1.43
VPS53-213ENST00000572334 PRAMEF25A6NGN4 478 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 FRG2CA6NGY1 282 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 TUBAL3A6NHL2 446 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 A6NHS1 94 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 OR6C70A6NIJ9 312 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 CLCA1A8K7I4 914 aa6.09□□□□□ -1.43
VPS53-213ENST00000572334 TRIM49D1C9J1S8 452 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms