RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RSPO2Q6UXX9 243 aaPredicted RBP10.24□□□□□ -0.77
CLK3-226ENST00000569406 CRIPAKQ8N1N5 446 aa10.24□□□□□ -0.77
CLK3-226ENST00000569406 PXT1Q8NFP0 134 aa10.24□□□□□ -0.77
CLK3-226ENST00000569406 HGDQ93099 445 aa10.24□□□□□ -0.77
CLK3-226ENST00000569406 FOXRED1Q96CU9 486 aaPredicted RBP10.24□□□□□ -0.77
CLK3-226ENST00000569406 FAM122AQ96E09 287 aa10.24□□□□□ -0.77
CLK3-226ENST00000569406 LINGO1Q96FE5 620 aa10.24□□□□□ -0.77
CLK3-226ENST00000569406 SLC6A20Q9NP91 592 aa10.24□□□□□ -0.77
CLK3-226ENST00000569406 NLGN3Q9NZ94 848 aa10.24□□□□□ -0.77
CLK3-226ENST00000569406 GPR55Q9Y2T6 319 aaPredicted RBP10.24□□□□□ -0.77
CLK3-226ENST00000569406 COL4A6Q14031 1691 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 A0A1W2PQH9 124 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 MATN3O15232 486 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 C6orf47O95873 294 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 FAM157BP0CG42 384 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 ZNF44P15621 663 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 RPS2P15880 293 aaKnown RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 CST5P28325 142 aaPredicted RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 S100A2P29034 98 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 SOX3P41225 446 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 TM4SF4P48230 202 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 IDH2P48735 452 aaKnown RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 TIAL1Q01085 375 aaKnown RBP eCLIP10.23□□□□□ -0.772e-7■■■■■ 33.6
CLK3-226ENST00000569406 NRG1Q02297 640 aaPredicted RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 NHLH2Q02577 135 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 TCTN1Q2MV58 587 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 OVOS1Q6IE37 1185 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 FAM122BQ7Z309 247 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 PGBD5Q8N414 524 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 MED8Q96G25 268 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 ABCG5Q9H222 651 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 EML4Q9HC35 981 aaKnown RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 ABHD14A-ACY1A0A1B0GW23 586 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 WASH4PA8MWX3 477 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 KLHL18O94889 574 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 PMP2P02689 132 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 BTG1P62324 171 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 TWF1Q12792 350 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 ZNF155Q12901 538 aaPredicted RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 CDNFQ49AH0 187 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 CAPN13Q6MZZ7 669 aaPredicted RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 GPR153Q6NV75 609 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 Q6ZPB1 254 aaPredicted RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 GGHQ92820 318 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 C3orf49Q96BT1 292 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 C12orf66Q96MD2 445 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 TGM7Q96PF1 710 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 SMOC1Q9H4F8 434 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 NKIRAS2Q9NYR9 191 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 CFAP97Q9P2B7 532 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 METTL1Q9UBP6 276 aaKnown RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 CFAP20Q9Y6A4 193 aaKnown RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 SLC35F4A4IF30 521 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 ARPC5O15511 151 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 NPSP0C0P6 89 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 GABRB1P18505 474 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 PAX6P26367 422 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 HTR5AP47898 357 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 HSPA7P48741 367 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 EEFSECP57772 596 aaKnown RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 FAM189BP81408 668 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 GPR176Q14439 515 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 SURF2Q15527 256 aaPredicted RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 DMRTA1Q5VZB9 504 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 H3F3CQ6NXT2 135 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 HSDL2Q6YN16 418 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 CYHR1Q6ZMK1 362 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 LHFPL3Q86UP9 236 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 CCDC117Q8IWD4 279 aaPredicted RBP10.23□□□□□ -0.77
CLK3-226ENST00000569406 OR6X1Q8NH79 312 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 TPD52L3Q96J77 140 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 YIPF4Q9BSR8 244 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 AKTIPQ9H8T0 292 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 MEAF6Q9HAF1 191 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 TCF7L1Q9HCS4 588 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 MID1IP1Q9NPA3 183 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 HCSTQ9UBK5 93 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 SPASTQ9UBP0 616 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 IKZF3Q9UKT9 509 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 RPH3ALQ9UNE2 315 aa10.23□□□□□ -0.77
CLK3-226ENST00000569406 DENND4AQ7Z401 1863 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 IGLV3-10A0A075B6K4 115 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 H7C1Q1 480 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 SEC14L5O43304 696 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 PIRTP0C851 137 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 HTR1EP28566 365 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 SLC1A2P43004 574 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 CAV3P56539 151 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 RIPPLY1Q0D2K3 151 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 TRA2AQ13595 282 aaKnown RBP eCLIP10.22□□□□□ -0.77
CLK3-226ENST00000569406 RBM39Q14498 530 aaKnown RBP10.22□□□□□ -0.77
CLK3-226ENST00000569406 DHRS7BQ6IAN0 325 aaPredicted RBP10.22□□□□□ -0.77
CLK3-226ENST00000569406 B3GLCTQ6Y288 498 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 RNF165Q6ZSG1 346 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 ZNF605Q86T29 641 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 MON1AQ86VX9 555 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 SCN4BQ8IWT1 228 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 OR9A1PQ8NGU1 263 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 STYXQ8WUJ0 223 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 TMEM203Q969S6 136 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms