RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 QSOX2Q6ZRP7 698 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 HMGN2P46Q86SG4 172 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 PEX5LQ8IYB4 626 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 ZNF786Q8N393 782 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 TSPAN14Q8NG11 270 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 OR6T1Q8NGN1 323 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 IFI44Q8TCB0 444 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 GPR151Q8TDV0 419 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 FKBP10Q96AY3 582 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 LOXL4Q96JB6 756 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 VSTM2LQ96N03 204 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 PTCHD1Q96NR3 888 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 GABARAPL3Q9BY60 117 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 FOLH1BQ9HBA9 442 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 RLIMQ9NVW2 624 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 RHCGQ9UBD6 479 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 NDRG4Q9ULP0 352 aaKnown RBP11.81□□□□□ -0.52
USP3-213ENST00000559711 ZNF232Q9UNY5 417 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 SRPK3Q9UPE1 567 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 PCDHGA8Q9Y5G5 932 aa11.81□□□□□ -0.52
USP3-213ENST00000559711 HEMK1Q9Y5R4 338 aaPredicted RBP11.81□□□□□ -0.52
USP3-213ENST00000559711 A0A1W2PRQ8 180 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 HRKO00198 91 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 BCKDKO14874 412 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 KIAA0513O60268 411 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 SEC24DO94855 1032 aaPredicted RBP11.8□□□□□ -0.52
USP3-213ENST00000559711 CLPTM1O96005 669 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 TFAP2AP05549 437 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 FBLP22087 321 aaKnown RBP11.8□□□□□ -0.52
USP3-213ENST00000559711 CBLP22681 906 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 SSTR4P31391 388 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 CLK3P49761 638 aaKnown RBP11.8□□□□□ -0.52
USP3-213ENST00000559711 ISL1P61371 349 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 PSG6Q00889 435 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 ZNF155Q12901 538 aaPredicted RBP11.8□□□□□ -0.52
USP3-213ENST00000559711 NPRL3Q12980 569 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 DGCR6Q14129 220 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 NPTX1Q15818 432 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 CCNJQ5T5M9 372 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 RHBDD2Q6NTF9 364 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 ZNF619Q8N2I2 560 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 CLIP4Q8N3C7 705 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 FBLIM1Q8WUP2 373 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 PIK3R3Q92569 461 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 NR4A3Q92570 626 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 CNDP2Q96KP4 475 aaKnown RBP11.8□□□□□ -0.52
USP3-213ENST00000559711 YIPF2Q9BWQ6 316 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 RIBC2Q9H4K1 309 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 PAPOLBQ9NRJ5 636 aaKnown RBP11.8□□□□□ -0.52
USP3-213ENST00000559711 SLC13A4Q9UKG4 626 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 TMCC3Q9ULS5 477 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 ZNF443Q9Y2A4 671 aaPredicted RBP11.8□□□□□ -0.52
USP3-213ENST00000559711 POFUT2Q9Y2G5 429 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 HSPE1-MOB4S4R3N1 261 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 SPTBP11277 2137 aa11.8□□□□□ -0.52
USP3-213ENST00000559711 TRBV4-1A0A0J9YWV2 114 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 GXYLT2A0PJZ3 443 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 TRIM64CA6NLI5 447 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 TTC36A6NLP5 189 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 FAAHO00519 579 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 NTN3O00634 580 aaPredicted RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 BRINP1O60477 761 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 PRAMEF2O60811 474 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 OXSR1O95747 527 aaPredicted RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 IFNA16P05015 189 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 ZNF883P0CG24 379 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 ELAVL4P26378 380 aaKnown RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 MPLP40238 635 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 RPL5P46777 297 aaKnown RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 EEF1A1P68104 462 aaKnown RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 TUBA4AP68366 448 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 IL1RL1Q01638 556 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 RHAGQ02094 409 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 PIN1Q13526 163 aaPredicted RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 LARS2Q15031 903 aaKnown RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 ZNHIT3Q15649 155 aaPredicted RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 LPAL2Q16609 132 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 DCST1Q5T197 706 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 DBX2Q6ZNG2 339 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 TSPYL5Q86VY4 417 aaPredicted RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 TAGAPQ8N103 731 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 ZNF615Q8N8J6 731 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 OR7G1Q8NGA0 311 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 PTPMT1Q8WUK0 201 aaPredicted RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 CCDC74BQ96LY2 380 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 PRRC1Q96M27 445 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 PITX2Q99697 317 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 GTPBP2Q9BX10 602 aaKnown RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 ING2Q9H160 280 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 CACYBPQ9HB71 228 aaKnown RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 FBXO34Q9NWN3 711 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 KLHL28Q9NXS3 571 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 TUBA8Q9NY65 449 aaPredicted RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 GPR55Q9Y2T6 319 aaPredicted RBP11.79□□□□□ -0.52
USP3-213ENST00000559711 PCDHGA5Q9Y5G8 931 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 A0A0C4DFX4 3053 aa11.79□□□□□ -0.52
USP3-213ENST00000559711 RP1P56715 2156 aa11.78□□□□□ -0.52
USP3-213ENST00000559711 TPST2O60704 377 aa11.78□□□□□ -0.52
USP3-213ENST00000559711 KCNK2O95069 426 aa11.78□□□□□ -0.52
USP3-213ENST00000559711 CLPSP04118 112 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms