RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	SLC26A2	P50443	739 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	CAPZA1	P52907	286 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	ACTN3	Q08043	901 aa	Predicted RBP	2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	RIPK1	Q13546	671 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	CASP8	Q14790	479 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	MEF2D	Q14814	521 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	HERPUD1	Q15011	391 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	SPHAR	Q15513	63 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	SNCB	Q16143	134 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	STX1A	Q16623	288 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	CCDC57	Q2TAC2	916 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	NHSL2	Q5HYW2	709 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	HHAT	Q5VTY9	493 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	ATL3	Q6DD88	541 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	WDR49	Q8IV35	697 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	TEX9	Q8N6V9	391 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	FAM81A	Q8TBF8	368 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	SPATA18	Q8TC71	538 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	LZIC	Q8WZA0	190 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	PRCC	Q92733	491 aa	Predicted RBP	2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	MARC2	Q969Z3	335 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	CCDC47	Q96A33	483 aa	Known RBP	2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	PPP1R14B	Q96C90	147 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	CFAP53	Q96M91	514 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	ALS2CR12	Q96Q35	445 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	C19orf43	Q9BQ61	176 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	LZTS2	Q9BRK4	669 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	API5	Q9BZZ5	524 aa	Known RBP	2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	ELOVL4	Q9GZR5	314 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	IQCG	Q9H095	443 aa	Known RBP	2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	CXXC4	Q9H2H0	198 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	EHD1	Q9H4M9	534 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	VCPKMT	Q9H867	229 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	ANO10	Q9NW15	660 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	SUN2	Q9UH99	717 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	PDE10A	Q9Y233	779 aa		2.59	□□□□□ -1.99
VPS13C-208	ENST00000559119	GAK	O14976	1311 aa		2.59	□□□□□ -2
VPS13C-208	ENST00000559119	CDHR2	Q9BYE9	1310 aa		2.59	□□□□□ -2
VPS13C-208	ENST00000559119	SHPRH	Q149N8	1683 aa		2.59	□□□□□ -2
VPS13C-208	ENST00000559119	PPRC1	Q5VV67	1664 aa	Known RBP	2.59	□□□□□ -2
VPS13C-208	ENST00000559119	NSD2	O96028	1365 aa		2.59	□□□□□ -2
VPS13C-208	ENST00000559119	NRXN1	Q9ULB1	1477 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	IQGAP2	Q13576	1575 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	USP32	Q8NFA0	1604 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	CROCC2	H7BZ55	1655 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	GOLGA6L7	A0A1B0GV03	622 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	GOLGA6L10	A6NI86	522 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	GOLGA8K	D6RF30	607 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	STX10	O60499	249 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	TBCA	O75347	108 aa	Known RBP	2.58	□□□□□ -2
VPS13C-208	ENST00000559119	GHR	P10912	638 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	PTPN4	P29074	926 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	OR1D2	P34982	312 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	PEX19	P40855	299 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	IER3	P46695	156 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	CCNG1	P51959	295 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	ZNF45	Q02386	682 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	DYNC1I2	Q13409	638 aa	Known RBP	2.58	□□□□□ -2
VPS13C-208	ENST00000559119	XRCC4	Q13426	336 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	TAF7	Q15545	349 aa	Predicted RBP	2.58	□□□□□ -2
VPS13C-208	ENST00000559119	MPPED2	Q15777	294 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	PRR4	Q16378	134 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	KCTD19	Q17RG1	926 aa	Predicted RBP	2.58	□□□□□ -2
VPS13C-208	ENST00000559119	WHAMMP3	Q1A5X7	153 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	CCDC40	Q4G0X9	1142 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	CMPK2	Q5EBM0	449 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	SPATA46	Q5T0L3	261 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	DDI2	Q5TDH0	399 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	ZNF691	Q5VV52	312 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	ZNF540	Q8NDQ6	660 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	BIRC7	Q96CA5	298 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	JAKMIP1	Q96N16	626 aa	Known RBP	2.58	□□□□□ -2
VPS13C-208	ENST00000559119	ZNF396	Q96N95	335 aa	Predicted RBP	2.58	□□□□□ -2
VPS13C-208	ENST00000559119	PLEKHF1	Q96S99	279 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	CAPS2	Q9BXY5	557 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	GDF3	Q9NR23	364 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	GMEB1	Q9Y692	573 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	CDC42BPA	Q5VT25	1732 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	ACE	P12821	1306 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	SH3TC1	Q8TE82	1336 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	KIAA0232	Q92628	1395 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	IFT140	Q96RY7	1462 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	ABCC3	O15438	1527 aa		2.58	□□□□□ -2
VPS13C-208	ENST00000559119	URB2	Q14146	1524 aa	Known RBP	2.58	□□□□□ -2
VPS13C-208	ENST00000559119	TTC37	Q6PGP7	1564 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	NEURL4	Q96JN8	1562 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	HECW2	Q9P2P5	1572 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	IQGAP1	P46940	1657 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	MYOM1	P52179	1685 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	GOLGA6L4	A6NEF3	574 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	LRRIQ3	A6PVS8	624 aa	Predicted RBP	2.57	□□□□□ -2
VPS13C-208	ENST00000559119	MEI4	A8MW99	385 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	CTDSPL	O15194	276 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	N4BP1	O75113	896 aa	Known RBP	2.57	□□□□□ -2
VPS13C-208	ENST00000559119	GPX5	O75715	221 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	IGHV3-23	P01764	117 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	TSPY3	P0CV98	308 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	TSPY8	P0CW00	308 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	CT45A10	P0DMU9	189 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	UCP1	P25874	307 aa		2.57	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 79 ms