RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 ZNF221Q9UK13 617 aa2.41□□□□□ -2.02
SCFD1-216ENST00000555550 RPH3AQ9Y2J0 694 aaPredicted RBP2.41□□□□□ -2.02
SCFD1-216ENST00000555550 KLHDC2Q9Y2U9 406 aa2.41□□□□□ -2.02
SCFD1-216ENST00000555550 FKBP7Q9Y680 259 aa2.41□□□□□ -2.02
SCFD1-216ENST00000555550 LRRD1A4D1F6 860 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 TMEM110-MUSTN1A8MSY1 372 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 NPIPA2E9PIF3 369 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 ZNF254O75437 659 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 MMP23AO75900 390 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 AKAP3O75969 853 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 TGDSO95455 350 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 SYNGR4O95473 234 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 ALOX5P09917 674 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 VDRP11473 427 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 TMOD1P28289 359 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 MARCKSP29966 332 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-216ENST00000555550 PITPNBP48739 271 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 CCZ1BP86790 482 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 CCZ1P86791 482 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-216ENST00000555550 SLMAPQ14BN4 828 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 RAB35Q15286 201 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 CCDC14Q49A88 953 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 ARMC3Q5W041 872 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 UFSP1Q6NVU6 142 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 HSD17B13Q7Z5P4 300 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-216ENST00000555550 TMEM110Q86TL2 294 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 PARGQ86W56 976 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 COLGALT1Q8NBJ5 622 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 BBS1Q8NFJ9 593 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 RNASE8Q8TDE3 154 aaKnown RBP2.4□□□□□ -2.03
SCFD1-216ENST00000555550 P3H4Q92791 437 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 VPS39Q96JC1 886 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 NICN1Q9BSH3 213 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 MRPL9Q9BYD2 267 aaKnown RBP2.4□□□□□ -2.03
SCFD1-216ENST00000555550 PIGVQ9NUD9 493 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 NDUFA13Q9P0J0 144 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 USP6P35125 1406 aa2.4□□□□□ -2.03
SCFD1-216ENST00000555550 TBL1XO60907 577 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 ANP32DO95626 131 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 PGK2P07205 417 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 IGFBP1P08833 259 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-216ENST00000555550 PSG2P11465 335 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 AREGP15514 252 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 STK19P49842 368 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-216ENST00000555550 SGSHP51688 502 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 TIMM10P62072 90 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 IL9RQ01113 521 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 UBXN1Q04323 297 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 TEFQ10587 303 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 ZKSCAN8Q15776 578 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-216ENST00000555550 SMU1Q2TAY7 513 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 AGBL2Q5U5Z8 902 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 SULT1C3Q6IMI6 304 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 FRA10AC1Q70Z53 315 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 SERPINA12Q8IW75 414 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 CHCHD4Q8N4Q1 142 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 CSNK1A1LQ8N752 337 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 ST7LQ8TDW4 575 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 BCL2L2Q92843 193 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-216ENST00000555550 STARD4Q96DR4 205 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 C5orf30Q96GV9 206 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 IL4I1Q96RQ9 567 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 SLC25A39Q9BZJ4 359 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-216ENST00000555550 ZNF331Q9NQX6 463 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-216ENST00000555550 DCAF13Q9NV06 445 aaKnown RBP2.39□□□□□ -2.03
SCFD1-216ENST00000555550 MIOXQ9UGB7 285 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 CDC42BPBQ9Y5S2 1711 aa2.39□□□□□ -2.03
SCFD1-216ENST00000555550 NACAE9PAV3 2078 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 MEGF6O75095 1541 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 IGLV3-16A0A075B6K0 115 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 CCDC69A6NI79 296 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 DHRS7CA6NNS2 312 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 ABCD4O14678 606 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 SLC7A4O43246 635 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 BUB1O43683 1085 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 HPNP05981 417 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 RFC2P35250 354 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 NME3Q13232 169 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 PDE7AQ13946 482 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 DPYSQ14117 519 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 TFDP3Q5H9I0 405 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 BEND6Q5SZJ8 279 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-216ENST00000555550 METTL11BQ5VVY1 283 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 TOM1L2Q6ZVM7 507 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 GPBP1Q86WP2 473 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 ZNF100Q8IYN0 542 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 PSMA8Q8TAA3 256 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 ADAMTS16Q8TE57 1224 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 TMEM45BQ96B21 275 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 TADA1Q96BN2 335 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 PLEKHF1Q96S99 279 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 CARD6Q9BX69 1037 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 CCSER1Q9C0I3 900 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 MEPEQ9NQ76 525 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-216ENST00000555550 CYTL1Q9NRR1 136 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 FAM114A2Q9NRY5 505 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 ARID1AO14497 2285 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 GTF3C1Q12789 2109 aa2.38□□□□□ -2.03
SCFD1-216ENST00000555550 PTPRUQ92729 1446 aa2.37□□□□□ -2.03
SCFD1-216ENST00000555550 E9PLD3 99 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms