RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 ZNF497Q6ZNH5 498 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 Q6ZVQ6 151 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CDR2LQ86X02 465 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ITPRIPQ8IWB1 547 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 DND1Q8IYX4 353 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ELMOD1Q8N336 334 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 SLC43A2Q8N370 569 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 MRPL43Q8N983 215 aaKnown RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF485Q8NCK3 441 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 OR5M9Q8NGP3 310 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 RPLP0P6Q8NHW5 317 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ST7LQ8TDW4 575 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 SMPDL3AQ92484 453 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 FAM3CQ92520 227 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 SNX21Q969T3 373 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 FAM46BQ96A09 425 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 SLC35C1Q96A29 364 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CNRIP1Q96F85 164 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CFAP36Q96G28 342 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF274Q96GC6 653 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 EPSTI1Q96J88 318 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 POM121L2Q96KW2 1035 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 NSMCE3Q96MG7 304 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 OVOL2Q9BRP0 275 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 CCM2Q9BSQ5 444 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 FGFBP2Q9BYJ0 223 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 LRRC2Q9BYS8 371 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 PLA2G2FQ9BZM2 168 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 TRIM7Q9C029 511 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ZBP1Q9H171 429 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 MAGEF1Q9HAY2 307 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 PXMP2Q9NR77 195 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 TEX10Q9NXF1 929 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 GTSE1Q9NYZ3 720 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 BAIAP2L1Q9UHR4 511 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 MAD2L2Q9UI95 211 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 SNX5Q9Y5X3 404 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 USP9YO00507 2555 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-208ENST00000554785 ANK1P16157 1881 aa1.28□□□□□ -2.2
PRPF39-208ENST00000554785 NRCAMQ92823 1304 aa1.28□□□□□ -2.21
PRPF39-208ENST00000554785 IGSF9BQ9UPX0 1349 aa1.28□□□□□ -2.21
PRPF39-208ENST00000554785 PTPRDP23468 1912 aa1.28□□□□□ -2.21
PRPF39-208ENST00000554785 SVEP1Q4LDE5 3571 aa1.28□□□□□ -2.21
PRPF39-208ENST00000554785 PRRC2CQ9Y520 2896 aaKnown RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 TNRC6BQ9UPQ9 1833 aaKnown RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 CCDC168Q8NDH2 2452 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 PCNX1Q96RV3 2341 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 COL4A2P08572 1712 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 MED13LQ71F56 2210 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 LOC105371242A0A075B767 164 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 TMEM129A0AVI4 362 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 TMEM150BA6NC51 233 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 C5orf51A6NDU8 294 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 PALM2-AKAP2B1ALY0 433 aaPredicted RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 K7EQD1 137 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 RNF103O00237 685 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 CHUKO15111 745 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 SIGLEC5O15389 551 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 SYT7O43581 403 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 TLX2O43763 284 aaPredicted RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 KERAO60938 352 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 MTRF1O75570 445 aaKnown RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 GSTA2P09210 222 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 PDHBP11177 359 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 ODC1P11926 461 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 SKILP12757 684 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 HLA-DPA1P20036 260 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 EDNRAP25101 427 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 ACKR3P25106 362 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 GJB2P29033 226 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 GDI1P31150 447 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 NOVP48745 357 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 CLK1P49759 484 aaKnown RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 LUMP51884 338 aaPredicted RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 SMSP52788 366 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 UCP2P55851 309 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 ARPP19P56211 112 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 GSCP56915 257 aaPredicted RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 STARD6P59095 220 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 ERVK11-1P61568 191 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 ARF5P84085 180 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 MGAT3Q09327 533 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 LCP2Q13094 533 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 HTR4Q13639 388 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 NECTIN1Q15223 517 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 C3AR1Q16581 482 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 QRICH1Q2TAL8 776 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 MOGAT2Q3SYC2 334 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 FASTKD1Q53R41 847 aaKnown RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 CELF3Q5SZQ8 465 aaKnown RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 MARCH8Q5T0T0 291 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 LYPLAL1Q5VWZ2 237 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 TWF2Q6IBS0 349 aaKnown RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 CD164L2Q6UWJ8 174 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 LCLAT1Q6UWP7 414 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 TMEM64Q6YI46 380 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 CYP4V2Q6ZWL3 525 aaPredicted RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 Q71RC1 249 aaPredicted RBP1.27□□□□□ -2.21
PRPF39-208ENST00000554785 LRRTM1Q86UE6 522 aa1.27□□□□□ -2.21
PRPF39-208ENST00000554785 MYPOPQ86VE0 399 aaPredicted RBP1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms