RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 RABGAP1LQ5R372 815 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 LINC00242Q5T6M2 205 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 PRR5LQ6MZQ0 368 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 PNCKQ6P2M8 343 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 ZNF841Q6ZN19 808 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 ZNF679Q8IYX0 411 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 AKR1E2Q96JD6 320 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 ART5Q96L15 291 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 CCT7Q99832 543 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 FAM173AQ9BQD7 235 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 RPP25Q9BUL9 199 aaKnown RBP4.15□□□□□ -1.75
SCFD1-209ENST00000553280 FGFBP2Q9BYJ0 223 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 BARHL1Q9BZE3 327 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 COMMD4Q9H0A8 199 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 UPF3AQ9H1J1 476 aaKnown RBP4.15□□□□□ -1.75
SCFD1-209ENST00000553280 LIME1Q9H400 295 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 SP140LQ9H930 580 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 LRRC40Q9H9A6 602 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 MEAF6Q9HAF1 191 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 SPATA2Q9UM82 520 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 MRPS33Q9Y291 106 aaKnown RBP4.15□□□□□ -1.75
SCFD1-209ENST00000553280 GSTK1Q9Y2Q3 226 aa4.15□□□□□ -1.75
SCFD1-209ENST00000553280 TM9SF1O15321 606 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 DUX1O43812 170 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 NEBLO76041 1014 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 TM7SF2O76062 418 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 OPN1LWP04000 364 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 STK19P49842 368 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-209ENST00000553280 GSTO1P78417 241 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 PJVKQ0ZLH3 352 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 EIF2B1Q14232 305 aaKnown RBP4.14□□□□□ -1.75
SCFD1-209ENST00000553280 SEL1L3Q68CR1 1132 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 APOOLQ6UXV4 268 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 ADAMTSL5Q6ZMM2 481 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 Q6ZTC4 211 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 TSEN54Q7Z6J9 526 aaKnown RBP4.14□□□□□ -1.75
SCFD1-209ENST00000553280 RPAINQ86UA6 219 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 LRRTM1Q86UE6 522 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 PARGQ86W56 976 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 SPEM1Q8N4L4 309 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 EIF1ADQ8N9N8 165 aaKnown RBP4.14□□□□□ -1.75
SCFD1-209ENST00000553280 PRSS33Q8NF86 280 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 NANPQ8TBE9 248 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 NTNG2Q96CW9 530 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 DHTKD1Q96HY7 919 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-209ENST00000553280 PRICKLE1Q96MT3 831 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-209ENST00000553280 PSKH2Q96QS6 385 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 FEM1AQ9BSK4 669 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 PUS3Q9BZE2 481 aaKnown RBP4.14□□□□□ -1.75
SCFD1-209ENST00000553280 SLC25A51Q9H1U9 297 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 VPS33BQ9H267 617 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 VCX2Q9H322 139 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 ESM1Q9NQ30 184 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 C6orf203Q9P0P8 240 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-209ENST00000553280 RNF14Q9UBS8 474 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 ASIC3Q9UHC3 531 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 MGAT4AQ9UM21 535 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 EXOSC1Q9Y3B2 195 aaKnown RBP4.14□□□□□ -1.75
SCFD1-209ENST00000553280 AUP1Q9Y679 476 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 GRIN2DO15399 1336 aa4.14□□□□□ -1.75
SCFD1-209ENST00000553280 IGLV4-3A0A075B6K6 122 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 ESYT2A0FGR8 921 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 MFSD2BA6NFX1 497 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.13□□□□□ -1.75
SCFD1-209ENST00000553280 PDHXO00330 501 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 CASKO14936 926 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 ZSCAN12O43309 604 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 NUDT21O43809 227 aaKnown RBP4.13□□□□□ -1.75
SCFD1-209ENST00000553280 IDH3BO43837 385 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 EDIL3O43854 480 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 GPRIN2O60269 458 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 SORBS2O94875 1100 aaKnown RBP4.13□□□□□ -1.75
SCFD1-209ENST00000553280 NUDT14O95848 222 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 ANXA3P12429 323 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 CPN1P15169 458 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 H2AFXP16104 143 aaPredicted RBP4.13□□□□□ -1.75
SCFD1-209ENST00000553280 UGT1A4P22310 534 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 PPP2R1BP30154 601 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 SLC1A4P43007 532 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 RGS19P49795 217 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 EMDP50402 254 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 RIDAP52758 137 aaKnown RBP4.13□□□□□ -1.75
SCFD1-209ENST00000553280 HYAL1Q12794 435 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 RAB35Q15286 201 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 UBE2V2Q15819 145 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 CAMK4Q16566 473 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 CCL14Q16627 93 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 RABL6Q3YEC7 729 aaPredicted RBP4.13□□□□□ -1.75
SCFD1-209ENST00000553280 PYHIN1Q6K0P9 492 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 DPY19L4Q7Z388 723 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 TRMT10AQ8TBZ6 339 aaKnown RBP4.13□□□□□ -1.75
SCFD1-209ENST00000553280 DNASE2BQ8WZ79 361 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 TAF15Q92804 592 aaKnown RBP eCLIP4.13□□□□□ -1.75
SCFD1-209ENST00000553280 MYLPFQ96A32 169 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 WBP1Q96G27 269 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 OMDQ99983 421 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 SLC30A2Q9BRI3 323 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 RHOJQ9H4E5 214 aa4.13□□□□□ -1.75
SCFD1-209ENST00000553280 RNF41Q9H4P4 317 aaPredicted RBP4.13□□□□□ -1.75
SCFD1-209ENST00000553280 ADGRL4Q9HBW9 690 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms