RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 ATXN7L3Q14CW9 347 aaPredicted RBP4.94□□□□□ -1.62
SCFD1-208ENST00000553278 EMC2Q15006 297 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 FAM74A3Q4VXF1 159 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 CYBRD1Q53TN4 286 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 AGAP7PQ5VUJ5 663 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 KCNIP4Q6PIL6 250 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 C19orf48Q6RUI8 117 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 BTNL3Q6UXE8 466 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 GCNT7Q6ZNI0 430 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 TSEN54Q7Z6J9 526 aaKnown RBP4.94□□□□□ -1.62
SCFD1-208ENST00000553278 ZNF575Q86XF7 245 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 CIARTQ8N365 385 aaPredicted RBP4.94□□□□□ -1.62
SCFD1-208ENST00000553278 RAB3IL1Q8TBN0 382 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 LRRC15Q8TF66 581 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 PCNPQ8WW12 178 aaKnown RBP4.94□□□□□ -1.62
SCFD1-208ENST00000553278 AMDHD1Q96NU7 426 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 AGAP4Q96P64 663 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 RPP25Q9BUL9 199 aaKnown RBP4.94□□□□□ -1.62
SCFD1-208ENST00000553278 GPR174Q9BXC1 333 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 POLR3FQ9H1D9 316 aaPredicted RBP4.94□□□□□ -1.62
SCFD1-208ENST00000553278 SMOXQ9NWM0 555 aa4.94□□□□□ -1.62
SCFD1-208ENST00000553278 UTP6Q9NYH9 597 aaKnown RBP4.94□□□□□ -1.62
SCFD1-208ENST00000553278 COL3A1P02461 1466 aaPredicted RBP4.94□□□□□ -1.62
SCFD1-208ENST00000553278 ESYT2A0FGR8 921 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 NPIPB9F8W1W9 429 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 L7N2F9 121 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 PDLIM1O00151 329 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 OAS1P00973 400 aaKnown RBP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 ALPLP05186 524 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 CCDC159P0C7I6 412 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 HSMCR30P0CW71 290 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 ADORA3P0DMS8 318 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 T-ENOLP0DO92 83 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 ERVK-10P10266 1014 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 ANXA8P13928 327 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 TPSB2P20231 275 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 CALML3P27482 149 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 CCT3P49368 545 aaKnown RBP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 EMDP50402 254 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 HMGA2P52926 109 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 SH3BGRP55822 239 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 ERVK-16P61578 105 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 RPS27AP62979 156 aaKnown RBP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 ILF3Q12906 894 aaKnown RBP eCLIP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 EIF2B1Q14232 305 aaKnown RBP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 TPSAB1Q15661 275 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 CHI3L2Q15782 390 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 UBE2V2Q15819 145 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 PCK2Q16822 640 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 ECSCRQ19T08 205 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 GGTA1PQ4G0N0 100 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 UNC50Q53HI1 259 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 ANXA8L1Q5VT79 327 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 AWAT2Q6E213 333 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 BHLHB9Q6PI77 547 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 FIP1L1Q6UN15 594 aaKnown RBP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 ANGPTL8Q6UXH0 198 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 HACD2Q6Y1H2 254 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 LANCL3Q6ZV70 420 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 MOB2Q70IA6 237 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 CCDC80Q76M96 950 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 SLC26A9Q7LBE3 791 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 CDR2LQ86X02 465 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 OR6C4Q8NGE1 309 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 RBM14Q96PK6 669 aaKnown RBP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 USP28Q96RU2 1077 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 MEIS3Q99687 375 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 OVOL2Q9BRP0 275 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 TTYH2Q9BSA4 534 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 ZNF71Q9NQZ8 489 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 MRPL39Q9NYK5 338 aaKnown RBP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 ONECUT1Q9UBC0 465 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 PCSK1NQ9UHG2 260 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 PSME2Q9UL46 239 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 PPP1R3CQ9UQK1 317 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 MRPS18CQ9Y3D5 142 aaKnown RBP4.93□□□□□ -1.62
SCFD1-208ENST00000553278 TTC41PQ6P2S7 1318 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 DOCK7Q96N67 2140 aa4.93□□□□□ -1.62
SCFD1-208ENST00000553278 A0A087WW49 117 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 FAM172BPA6NC97 362 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 SNTNA6NMZ2 147 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 ZNF724A8MTY0 619 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 NPIPA7E9PJI5 369 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 SLCO1B7G3V0H7 640 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 K7ERI5 159 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 LRRTM2O43300 516 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 BUB3O43684 328 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 MAGEC1O60732 1142 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 PDE5AO76074 875 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 B3GAT3O94766 335 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 IGF1P05019 195 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 FGF4P08620 206 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 NPIPA8P0DM63 369 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 SAA4P35542 130 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 CAPGP40121 348 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 MAGEA8P43361 318 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 SLC7A2P52569 658 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 SEC61GP60059 68 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 NANOS3P60323 173 aaKnown RBP4.92□□□□□ -1.62
SCFD1-208ENST00000553278 EWSR1Q01844 656 aaKnown RBP eCLIP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms