RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 PRKAR2BP31323 418 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 RPS6P62753 249 aaKnown RBP3.09□□□□□ -1.91
CD44-215ENST00000525241 HERVK_113P63132 956 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 ERVK-8P63133 956 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 MRPS6P82932 125 aaKnown RBP3.09□□□□□ -1.91
CD44-215ENST00000525241 SRYQ05066 204 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 FUT7Q11130 342 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 SERTAD2Q14140 314 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 RAB35Q15286 201 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 NEK5Q6P3R8 708 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 VASH2Q86V25 355 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 GPR65Q8IYL9 337 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 OR13F1Q8NGS4 319 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 CARD6Q9BX69 1037 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 TM2D1Q9BX74 207 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 ERVK-6Q9BXR3 956 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 ELOVL4Q9GZR5 314 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 EXOSC3Q9NQT5 275 aaKnown RBP3.09□□□□□ -1.91
CD44-215ENST00000525241 ABCB10Q9NRK6 738 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 IL17CQ9P0M4 197 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 DPM3Q9P2X0 92 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 BCAP29Q9UHQ4 241 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 CCPG1Q9ULG6 757 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 ZNF490Q9ULM2 529 aaPredicted RBP3.09□□□□□ -1.91
CD44-215ENST00000525241 NUDCQ9Y266 331 aa3.09□□□□□ -1.91
CD44-215ENST00000525241 METP08581 1390 aa3.09□□□□□ -1.92
CD44-215ENST00000525241 ABCC9O60706 1549 aa3.09□□□□□ -1.92
CD44-215ENST00000525241 E9PMD0 336 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 SGK494L7N484 410 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 CDX4O14627 284 aaPredicted RBP3.08□□□□□ -1.92
CD44-215ENST00000525241 TNFSF11O14788 317 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 LATO43561 262 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 ALPPP05187 535 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 H2AFZP0C0S5 128 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 ALPPL2P10696 532 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 SDC1P18827 310 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 PTPN6P29350 595 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 PRDX2P32119 198 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 ACVR1BP36896 505 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 IL9RQ01113 521 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 PDK1Q15118 436 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 ZNF79Q15937 498 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 CAMK4Q16566 473 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 ISXQ2M1V0 245 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 CCDC40Q4G0X9 1142 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 BEND6Q5SZJ8 279 aaPredicted RBP3.08□□□□□ -1.92
CD44-215ENST00000525241 ZNF562Q6V9R5 426 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 TMEM26Q6ZUK4 368 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 NET1Q7Z628 596 aaPredicted RBP3.08□□□□□ -1.92
CD44-215ENST00000525241 ZNF677Q86XU0 584 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 APOBEC3FQ8IUX4 373 aaKnown RBP3.08□□□□□ -1.92
CD44-215ENST00000525241 DQX1Q8TE96 717 aaKnown RBP3.08□□□□□ -1.92
CD44-215ENST00000525241 SLC25A36Q96CQ1 311 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 B3GALT6Q96L58 329 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 NSMCE2Q96MF7 247 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 DPH7Q9BTV6 452 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 ATG10Q9H0Y0 220 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 ABCG8Q9H221 673 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 DUS2Q9NX74 493 aaKnown RBP3.08□□□□□ -1.92
CD44-215ENST00000525241 GHRLQ9UBU3 117 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 CLIP2Q9UDT6 1046 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 CROCCQ5TZA2 2017 aa3.08□□□□□ -1.92
CD44-215ENST00000525241 IGLV8-61A0A075B6I0 122 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 EPOPA6NHQ4 379 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 TM9SF1O15321 606 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 RAMP1O60894 148 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 NDUFA7O95182 113 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 HSPA1LP34931 641 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 RGRP47804 291 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 STARD6P59095 220 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 KRTAP12-2P59991 146 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 PRKCEQ02156 737 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 PUDPQ08623 228 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 WASHC5Q12768 1159 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 SNX1Q13596 522 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 GAMTQ14353 236 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 PDIA5Q14554 519 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 PKN2Q16513 984 aaKnown RBP3.07□□□□□ -1.92
CD44-215ENST00000525241 GLYR1Q49A26 553 aaPredicted RBP3.07□□□□□ -1.92
CD44-215ENST00000525241 ZNF57Q68EA5 555 aaPredicted RBP3.07□□□□□ -1.92
CD44-215ENST00000525241 DMKNQ6E0U4 476 aaPredicted RBP3.07□□□□□ -1.92
CD44-215ENST00000525241 P4HA3Q7Z4N8 544 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 PARGQ86W56 976 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 ELMOD2Q8IZ81 293 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 ADAMTS16Q8TE57 1224 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 ART4Q93070 314 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 ADIPOR1Q96A54 375 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 ZIM3Q96PE6 472 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 KIR2DL4Q99706 377 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 MAPKAP1Q9BPZ7 522 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 WRAP53Q9BUR4 548 aaKnown RBP3.07□□□□□ -1.92
CD44-215ENST00000525241 ELOVL2Q9NXB9 296 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 KLRF1Q9NZS2 232 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 DUSP12Q9UNI6 340 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 CA5BQ9Y2D0 317 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 EXOSC1Q9Y3B2 195 aaKnown RBP3.07□□□□□ -1.92
CD44-215ENST00000525241 GRIN2DO15399 1336 aa3.07□□□□□ -1.92
CD44-215ENST00000525241 TTC26A0AVF1 554 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 H0YL77 283 aa3.06□□□□□ -1.92
CD44-215ENST00000525241 ZNF646O15015 1829 aaPredicted RBP3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms