RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 ERVK-10P10266 1014 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 IL7RP16871 459 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 ZNF182P17025 639 aaPredicted RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 DDX5P17844 614 aaKnown RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 ARL3P36405 182 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 EIF2S3P41091 472 aaKnown RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 ETV5P41161 510 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 LTBQ06643 244 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 ABRQ12979 859 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 PRKAA1Q13131 559 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 TUBB2AQ13885 445 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 SOWAHCQ53LP3 525 aaPredicted RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 ZNF789Q5FWF6 425 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 SPANXN3Q5MJ09 141 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 CTSL3PQ5NE16 218 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 PLEKHS1Q5SXH7 462 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 DUPD1Q68J44 220 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 PQLC2Q6ZP29 291 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 KCNMB4Q86W47 210 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 AMIGO1Q86WK6 493 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 OOSP2Q86WS3 158 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 LMNTD2Q8IXW0 634 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 TBC1D21Q8IYX1 336 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 SLC22A15Q8IZD6 547 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 SPATA6LQ8N4H0 392 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 ZNF248Q8NDW4 579 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 MNS1Q8NEH6 495 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 OR52E1Q8NGJ3 308 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 OR5AR1Q8NGP9 310 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 CFAP61Q8NHU2 1237 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 LKAAEAR1Q8TD35 194 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 SKA2Q8WVK7 121 aaPredicted RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 ART4Q93070 314 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 CFAP36Q96G28 342 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 NAF1Q96HR8 494 aaKnown RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 TMEM68Q96MH6 324 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 TMEM204Q9BSN7 226 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 HGH1Q9BTY7 390 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 TUBB2BQ9BVA1 445 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 KRTAP17-1Q9BYP8 105 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 RAB17Q9H0T7 212 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 CCDC68Q9H2F9 335 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 TFB2MQ9H5Q4 396 aaKnown RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 XKR8Q9H6D3 395 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 PPANQ9NQ55 473 aaKnown RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 FBXO6Q9NRD1 293 aaPredicted RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 IARS2Q9NSE4 1012 aaKnown RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 OCIAD1Q9NX40 245 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 SLC39A1Q9NY26 324 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 POLG2Q9UHN1 485 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 FBXO5Q9UKT4 447 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 CHMP2BQ9UQN3 213 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 TDRKHQ9Y2W6 561 aaKnown RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 UTP11Q9Y3A2 253 aaKnown RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 LRRK1Q38SD2 2015 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 ZZEF1O43149 2961 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 MAP1BP46821 2468 aaKnown RBP6.48□□□□□ -1.37
SDCBP-208ENST00000520228 PKD1L2Q7Z442 2459 aa6.48□□□□□ -1.37
SDCBP-208ENST00000520228 IGHV5-51A0A0C4DH38 117 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 GSAPA4D1B5 854 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 POLR1CO15160 346 aaPredicted RBP6.47□□□□□ -1.37
SDCBP-208ENST00000520228 NDUFS7O75251 213 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 NIPSNAP2O75323 286 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 NKX2-2O95096 273 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 F7P08709 466 aaPredicted RBP6.47□□□□□ -1.37
SDCBP-208ENST00000520228 ACAA1P09110 424 aaPredicted RBP6.47□□□□□ -1.37
SDCBP-208ENST00000520228 G6PDP11413 515 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 NELFEP18615 380 aaKnown RBP6.47□□□□□ -1.37
SDCBP-208ENST00000520228 POLR2CP19387 275 aaPredicted RBP6.47□□□□□ -1.37
SDCBP-208ENST00000520228 SHMT2P34897 504 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 SLC1A2P43004 574 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 PPP1CAP62136 330 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 CAV1Q03135 178 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 PDIA2Q13087 525 aaKnown RBP6.47□□□□□ -1.37
SDCBP-208ENST00000520228 FHL1Q13642 323 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 TTLL9Q3SXZ7 439 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 DCAF12Q5T6F0 453 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 STEAP4Q687X5 459 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 METTL2BQ6P1Q9 378 aaKnown RBP6.47□□□□□ -1.37
SDCBP-208ENST00000520228 TTC23LQ6PF05 361 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 CNSTQ6PJW8 725 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 UNC5DQ6UXZ4 953 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 PRSS42Q7Z5A4 293 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 GLCCI1Q86VQ1 547 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 FJX1Q86VR8 437 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 BMPERQ8N8U9 685 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 FBXO36Q8NEA4 188 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 OR5K2Q8NHB8 316 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 KIF18AQ8NI77 898 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 KCNE4Q8WWG9 221 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 CERS2Q96G23 380 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 METTL2AQ96IZ6 378 aaKnown RBP6.47□□□□□ -1.37
SDCBP-208ENST00000520228 MARK4Q96L34 752 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 FOPNLQ96NB1 174 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 MAP3K3Q99759 626 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 CTRCQ99895 268 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 SH3GL2Q99962 352 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 DDA1Q9BW61 102 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 PPP1R3EQ9H7J1 279 aa6.47□□□□□ -1.37
SDCBP-208ENST00000520228 FBXO8Q9NRD0 319 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms