RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 MYNNQ9NPC7 610 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 TAS2R16Q9NYV7 291 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 SERTAD3Q9UJW9 196 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 MAFFQ9ULX9 164 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 CCL26Q9Y258 94 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 ANKRD36CQ5JPF3 1778 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 IGLV3-10A0A075B6K4 115 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 TRIM64CA6NLI5 447 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 CCSMST1Q4G0I0 132 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 UBE2UQ5VVX9 321 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 PODNL1Q6PEZ8 512 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 PDZD3Q86UT5 571 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 HORMAD2Q8N7B1 307 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 OR6C4Q8NGE1 309 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 OR6Q1Q8NGQ2 317 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 TBC1D15Q8TC07 691 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 TRMT2BQ96GJ1 504 aaKnown RBP11.98□□□□□ -0.49
USP53-209ENST00000514665 MNTQ99583 582 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 MROQ9BYG7 248 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 SLC7A7Q9UM01 511 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 PPM1BO75688 479 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 PPP1R3DO95685 299 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 PLGP00747 810 aaPredicted RBP11.98□□□□□ -0.49
USP53-209ENST00000514665 RLN2P04090 185 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 MMP2P08253 660 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 FBXO45P0C2W1 286 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 SMIM18P0DKX4 95 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 RAB3BP20337 219 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 S1PR1P21453 382 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 GIPRP48546 466 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 E2F1Q01094 437 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 SGCBQ16585 318 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 BCL2L15Q5TBC7 163 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 OR2G6Q5TZ20 316 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 OR13F1Q8NGS4 319 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 THAP6Q8TBB0 222 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 SAP130Q9H0E3 1048 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 KCMF1Q9P0J7 381 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 FAM227AF5H4B4 570 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 MAS1P04201 325 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 GYPBP06028 91 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 ITGAMP11215 1152 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 JUNDP17535 347 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 ITGB7P26010 798 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 AHRP35869 848 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 RBM34P42696 430 aaKnown RBP11.98□□□□□ -0.49
USP53-209ENST00000514665 SLC6A11P48066 632 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 ARHGDIBP52566 201 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 SLC7A9P82251 487 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 ZNF91Q05481 1191 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 RPL13AP3Q6NVV1 102 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 MTFR2Q6P444 385 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 SYNPOQ8N3V7 929 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 MS4A15Q8N5U1 240 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 RIT1Q92963 219 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 TREX2Q9BQ50 279 aaPredicted RBP11.98□□□□□ -0.49
USP53-209ENST00000514665 G6PC3Q9BUM1 346 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 SFXN1Q9H9B4 322 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 CLEC4EQ9ULY5 219 aa11.98□□□□□ -0.49
USP53-209ENST00000514665 I6L893 689 aaPredicted RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 TAPBPO15533 448 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 KCNK5O95279 499 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 CYB5AP00167 134 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 CA3P07451 260 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 CHMP24386 653 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 SUOXP51687 545 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 GNG2P59768 71 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 SLC14A2Q15849 920 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 ALG1LQ6GMV1 187 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 RSPO2Q6UXX9 243 aaPredicted RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 B3GLCTQ6Y288 498 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 C12orf40Q86WS4 652 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 TMEM17Q86X19 198 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 OR5J2Q8NH18 312 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 CREB3L1Q96BA8 519 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 HS6ST2Q96MM7 605 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 ALG8Q9BVK2 526 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 PELI2Q9HAT8 420 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 THSD1Q9NS62 852 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 GSKIPQ9P0R6 139 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 APOBEC3BQ9UH17 382 aaKnown RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 RGS9O75916 674 aaPredicted RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 SCGNO76038 276 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 H2AFB2P0C5Z0 115 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 TNFSF8P32971 234 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 ARRB1P49407 418 aaPredicted RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 PRLHRP49683 370 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 GPR143P51810 404 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 WDR5P61964 334 aaKnown RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 TAP2Q03519 686 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 TBCEQ15813 527 aaPredicted RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 TP53I3Q53FA7 332 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 FAM219BQ5XKK7 198 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 ARHGAP11AQ6P4F7 1023 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 KCTD18Q6PI47 426 aaPredicted RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 LCTLQ6UWM7 567 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 GDPGP1Q6ZNW5 385 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 STX12Q86Y82 276 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 RASGRP3Q8IV61 690 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms