RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 HNRNPA2B1P22626 353 aaKnown RBP1.59□□□□□ -2.15
NUP54-208ENST00000508604 PRKACBP22694 351 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 CFL1P23528 166 aaKnown RBP1.59□□□□□ -2.15
NUP54-208ENST00000508604 CALML3P27482 149 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 PBLDP30039 288 aaPredicted RBP1.59□□□□□ -2.15
NUP54-208ENST00000508604 AXLP30530 894 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 EVI2BP34910 448 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 SERPINB6P35237 376 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 CRKLP46109 303 aaKnown RBP1.59□□□□□ -2.15
NUP54-208ENST00000508604 ATP5OP48047 213 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 IFNAR2P48551 515 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 HSPA13P48723 471 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 AP3M2P53677 418 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 MTTPP55157 894 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 PTENP60484 403 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 MZT1Q08AG7 82 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 TFCP2Q12800 502 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 CUL1Q13616 776 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 SLC10A1Q14973 349 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 STK38Q15208 465 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 QRICH1Q2TAL8 776 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 Q3ZCU0 254 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 C6orf136Q5SQH8 315 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 MPP7Q5T2T1 576 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 ZNF691Q5VV52 312 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 IL23RQ5VWK5 629 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 TPGS2Q68CL5 300 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 KRT80Q6KB66 452 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 TTC23LQ6PF05 361 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 C6orf89Q6UWU4 347 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 C3orf62Q6ZUJ4 267 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 LPCAT2Q7L5N7 544 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 CHST3Q7LGC8 479 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 SLC51BQ86UW2 128 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 LUZP1Q86V48 1076 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 VPS36Q86VN1 386 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 VSIG1Q86XK7 387 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 TGIF2LYQ8IUE0 185 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 C12orf56Q8IXR9 622 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 OR6C4Q8NGE1 309 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 OR52K1Q8NGK4 314 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 OR8K3Q8NH51 312 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 EXOC6Q8TAG9 804 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 ZNF671Q8TAW3 534 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 DQX1Q8TE96 717 aaKnown RBP1.59□□□□□ -2.15
NUP54-208ENST00000508604 SHC3Q92529 594 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 SEPT8Q92599 483 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 RIOK1Q9BRS2 568 aaKnown RBP1.59□□□□□ -2.15
NUP54-208ENST00000508604 NT5C3AQ9H0P0 336 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 MTIF3Q9H2K0 278 aaKnown RBP1.59□□□□□ -2.15
NUP54-208ENST00000508604 EHD1Q9H4M9 534 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 DCTPP1Q9H773 170 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 S100A14Q9HCY8 104 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 VCX3AQ9NNX9 186 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 C8orf4Q9NR00 106 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 POLE3Q9NRF9 147 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 DDX18Q9NVP1 670 aaKnown RBP1.59□□□□□ -2.15
NUP54-208ENST00000508604 EXTL2Q9UBQ6 330 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 SH3BGRL2Q9UJC5 107 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 ANAPC5Q9UJX4 755 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 GGA2Q9UJY4 613 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 DDX19BQ9UMR2 479 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 CHTOPQ9Y3Y2 248 aaKnown RBP1.59□□□□□ -2.15
NUP54-208ENST00000508604 ABCC11Q96J66 1382 aa1.59□□□□□ -2.16
NUP54-208ENST00000508604 PLEKHH1Q9ULM0 1364 aa1.59□□□□□ -2.16
NUP54-208ENST00000508604 FHAD1B1AJZ9 1412 aa1.59□□□□□ -2.16
NUP54-208ENST00000508604 MACROD2A1Z1Q3 448 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SLC15A5A6NIM6 579 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 A8MX80 341 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CCDC188H7C350 402 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 UBXN8O00124 270 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SGK1O00141 431 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 POLR2DO15514 142 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 ZW10O43264 779 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 PFDN1O60925 122 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SERF1AO75920 110 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 FLOT1O75955 427 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 LCA5LO95447 670 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 HLA-DRAP01903 254 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CHRNA1P02708 482 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 MT-ND3P03897 115 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 S100A9P06702 114 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 RETP07949 1114 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SNRPCP09234 159 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 CALM1P0DP23 149 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CALM2P0DP24 149 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CALM3P0DP25 149 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 HPGDP15428 266 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ERCC2P18074 760 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 VCLP18206 1134 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ADRA2CP18825 462 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ALDH3A1P30838 453 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 HOXA6P31267 233 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ID1P41134 155 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 MTIF2P46199 727 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 TUFMP49411 452 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 RGS7P49802 495 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SULT1E1P49888 294 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ARHGDIBP52566 201 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 VCPP55072 806 aaKnown RBP1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms