RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 UBQLNLQ8IYU4 475 aa19.05■□□□□ 0.64
SQSTM1-210ENST00000506042 MTBPQ96DY7 904 aa19.05■□□□□ 0.64
SQSTM1-210ENST00000506042 CNRIP1Q96F85 164 aaPredicted RBP19.05■□□□□ 0.64
SQSTM1-210ENST00000506042 PIK3IP1Q96FE7 263 aa19.05■□□□□ 0.64
SQSTM1-210ENST00000506042 BBS4Q96RK4 519 aa19.05■□□□□ 0.64
SQSTM1-210ENST00000506042 IQCGQ9H095 443 aaKnown RBP19.05■□□□□ 0.64
SQSTM1-210ENST00000506042 UBTD1Q9HAC8 227 aa19.05■□□□□ 0.64
SQSTM1-210ENST00000506042 C3orf14Q9HBI5 128 aa19.05■□□□□ 0.64
SQSTM1-210ENST00000506042 ZNF175Q9Y473 711 aa19.05■□□□□ 0.64
SQSTM1-210ENST00000506042 NAV3Q8IVL0 2385 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 C16orf97H3BN30 126 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 PCDH7O60245 1069 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 RPS17P08708 135 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 PPP3CBP16298 524 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 STARP49675 285 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 CLDN18P56856 261 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 MRPS35P82673 323 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 OCRLQ01968 901 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 GALNT1Q10472 559 aaPredicted RBP19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 ACKR1Q16570 336 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 DECR1Q16698 335 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 TEX35Q5T0J7 233 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 ZDHHC24Q6UX98 284 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 LCA5Q86VQ0 697 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 SLC44A2Q8IWA5 706 aaPredicted RBP19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 CCDC116Q8IYX3 515 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 PIGQQ9BRB3 760 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 ZBTB26Q9HCK0 441 aa19.04■□□□□ 0.64
SQSTM1-210ENST00000506042 TNFSF12-TNFSF13A0A0A6YY99 330 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 EMC8O43402 210 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 TMCC2O75069 709 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 TNFRSF21O75509 655 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 TNFSF13O75888 250 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 HK1P19367 917 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 CRYGSP22914 178 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 ZNF155Q12901 538 aaPredicted RBP19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 SGCBQ16585 318 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 CYP27C1Q4G0S4 372 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 ZNF628Q5EBL2 1059 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 Q71RC1 249 aaPredicted RBP19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 ZNF483Q8TF39 744 aaPredicted RBP19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 EXOSC8Q96B26 276 aaKnown RBP19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 NSUN5Q96P11 429 aaKnown RBP19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 C1QTNF3Q9BXJ4 246 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 PRRG4Q9BZD6 226 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 Q9N2J8 555 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 MIEF1Q9NQG6 463 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 PAQR5Q9NXK6 330 aaPredicted RBP19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 FBXL2Q9UKC9 423 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 PROCRQ9UNN8 238 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 EMC9Q9Y3B6 208 aa19.03■□□□□ 0.64
SQSTM1-210ENST00000506042 HMX2A2RU54 273 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 TTC36A6NLP5 189 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 PLOD3O60568 738 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 TSPAN2O60636 221 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 SUPT7LO94864 414 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 PLGP00747 810 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 CD8BP10966 210 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 EVI2BP34910 448 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 CLCQ05315 142 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 LTB4RQ15722 352 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 LETMD1Q6P1Q0 360 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 GPRIN3Q6ZVF9 776 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 CXorf67Q86X51 503 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 PLD6Q8N2A8 252 aaKnown RBP19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 METTL6Q8TCB7 284 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 COX4I2Q96KJ9 171 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 ZNF681Q96N22 645 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 PAFAH2Q99487 392 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 FOLH1BQ9HBA9 442 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 SLC35C2Q9NQQ7 365 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 FARSBQ9NSD9 589 aaKnown RBP19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 KLHL28Q9NXS3 571 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 C6orf203Q9P0P8 240 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 ZNF180Q9UJW8 692 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 NIPBLQ6KC79 2804 aaeCLIP19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 KIAA1549Q9HCM3 1950 aa19.02■□□□□ 0.64
SQSTM1-210ENST00000506042 SCO2O43819 266 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 IL3P08700 152 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 CT45A8P0DMV1 189 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 CT45A9P0DMV2 189 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 NTSP30990 170 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 SOX18P35713 384 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 UGT2B10P36537 528 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 GLYR1Q49A26 553 aaPredicted RBP19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 CT45A2Q5DJT8 189 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 OR5M10Q6IEU7 315 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 YTHDF3Q7Z739 585 aaKnown RBP19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 STK32CQ86UX6 486 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 RELL1Q8IUW5 271 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 SLC22A9Q8IVM8 553 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 CDYL2Q8N8U2 506 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 OR9A2Q8NGT5 310 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 Q96MF0 132 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 VSTM2LQ96N03 204 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 WFIKKN1Q96NZ8 548 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 PINK1Q9BXM7 581 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 CXorf56Q9H5V9 222 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 GRID1Q9ULK0 1009 aa19.01■□□□□ 0.63
SQSTM1-210ENST00000506042 FLNAP21333 2647 aaKnown RBP19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms