RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 PINK1Q9BXM7 581 aa13.24□□□□□ -0.29
TRAF4-212ENST00000498540 RNF122Q9H9V4 155 aa13.24□□□□□ -0.29
TRAF4-212ENST00000498540 FARSBQ9NSD9 589 aaKnown RBP13.24□□□□□ -0.29
TRAF4-212ENST00000498540 ZNF701Q9NV72 531 aaPredicted RBP13.24□□□□□ -0.29
TRAF4-212ENST00000498540 AHSPQ9NZD4 102 aa13.24□□□□□ -0.29
TRAF4-212ENST00000498540 WHRNQ9P202 907 aa13.24□□□□□ -0.29
TRAF4-212ENST00000498540 SLC12A4Q9UP95 1085 aa13.24□□□□□ -0.29
TRAF4-212ENST00000498540 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.23□□□□□ -0.29
TRAF4-212ENST00000498540 CCDC189A1A4V9 331 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 SEC14L5O43304 696 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 GUCY1B2O75343 617 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 KLHL2O95198 593 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 PLAUP00749 431 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 CTAGE8P0CG41 777 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 IL12BP29460 328 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 ALDH9A1P49189 494 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 DSCR4P56555 118 aaPredicted RBP13.23□□□□□ -0.29
TRAF4-212ENST00000498540 IFT88Q13099 833 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 TNK1Q13470 666 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 EFR3AQ14156 821 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 GUSBP1Q15486 140 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 ZNF628Q5EBL2 1059 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 TECRLQ5HYJ1 363 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 MROH9Q5TGP6 573 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 RAET1LQ5VY80 246 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 METTL2BQ6P1Q9 378 aaKnown RBP13.23□□□□□ -0.29
TRAF4-212ENST00000498540 ZNF704Q6ZNC4 412 aaPredicted RBP13.23□□□□□ -0.29
TRAF4-212ENST00000498540 LARP4Q71RC2 724 aaKnown RBP eCLIP13.23□□□□□ -0.293e-6■■□□□ 13
TRAF4-212ENST00000498540 CTAGE4Q8IX94 777 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 MEIOBQ8N635 442 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 GBP7Q8N8V2 638 aaPredicted RBP13.23□□□□□ -0.29
TRAF4-212ENST00000498540 MAPK1IP1LQ8NDC0 245 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 TMEM171Q8WVE6 324 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 CAVIN3Q969G5 261 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 EFHD2Q96C19 240 aaPredicted RBP13.23□□□□□ -0.29
TRAF4-212ENST00000498540 PHF21BQ96EK2 531 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 ERP44Q9BS26 406 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 NTMT1Q9BV86 223 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 KLHL4Q9C0H6 718 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 DSN1Q9H410 356 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 ZBTB26Q9HCK0 441 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 PCTPQ9UKL6 214 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 CR1P17927 2039 aa13.23□□□□□ -0.29
TRAF4-212ENST00000498540 A0A096LPK6 155 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 KLF4O43474 513 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 SCO2O43819 266 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 TNFRSF21O75509 655 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 SOX30O94993 753 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 TBXA2RP21731 343 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 STX2P32856 288 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 ATP5J2P56134 94 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 CLDN20P56880 219 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 NAB1Q13506 487 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 PON3Q15166 354 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 EXOC3L2Q2M3D2 409 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 C10orf62Q5T681 223 aaPredicted RBP13.22□□□□□ -0.29
TRAF4-212ENST00000498540 RPS27LQ71UM5 84 aaKnown RBP13.22□□□□□ -0.29
TRAF4-212ENST00000498540 CCDC91Q7Z6B0 441 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 CCDC25Q86WR0 208 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 FADS6Q8N9I5 356 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 OR2M3Q8NG83 312 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 OR4F6Q8NGB9 312 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 OR4N2Q8NGD1 307 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 OR5M1Q8NGP8 315 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 ZNF675Q8TD23 568 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 KAT2AQ92830 837 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 MRRFQ96E11 262 aaKnown RBP13.22□□□□□ -0.29
TRAF4-212ENST00000498540 VSTM2LQ96N03 204 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 ELOVL6Q9H5J4 265 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 CXorf56Q9H5V9 222 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 PPP4R1LQ9P1A2 415 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 UTS2RQ9UKP6 389 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 PSME2Q9UL46 239 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 PROCRQ9UNN8 238 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 ZNF337Q9Y3M9 751 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 SAR1BQ9Y6B6 198 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 ZNF780BQ9Y6R6 833 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 PRR14LQ5THK1 2151 aa13.22□□□□□ -0.29
TRAF4-212ENST00000498540 ANK3Q12955 4377 aaKnown RBP13.22□□□□□ -0.29
TRAF4-212ENST00000498540 CUBNO60494 3623 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 H3BML4 177 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 AQP8O94778 261 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 PDYNP01213 254 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 ALDOAP04075 364 aaKnown RBP13.21□□□□□ -0.29
TRAF4-212ENST00000498540 HK1P19367 917 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 EVI2BP34910 448 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 KRT20P35900 424 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 PAFAH1B1P43034 410 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 PNLIPRP2P54317 469 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 GGTA1PQ4G0N0 100 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 BEX5Q5H9J7 111 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 KLC3Q6P597 504 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 CCDC116Q8IYX3 515 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 PLD6Q8N2A8 252 aaKnown RBP13.21□□□□□ -0.29
TRAF4-212ENST00000498540 C1orf52Q8N6N3 182 aaKnown RBP13.21□□□□□ -0.29
TRAF4-212ENST00000498540 OR9A2Q8NGT5 310 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 HBEGFQ99075 208 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 FOLH1BQ9HBA9 442 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 PFDN4Q9NQP4 134 aa13.21□□□□□ -0.29
TRAF4-212ENST00000498540 FLRT3Q9NZU0 649 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms