RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 RPL5P46777 297 aaKnown RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 EXT1Q16394 746 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 MICAQ29983 383 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.82□□□□□ -1.16
USP54-215ENST00000497106 ZNF628Q5EBL2 1059 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 ESX1Q8N693 406 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 TMEM105Q8N8V8 129 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 OR5D16Q8NGK9 328 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 OR1L3Q8NH93 324 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 SLC35B4Q969S0 331 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 CXorf21Q9HAI6 301 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 GPC6Q9Y625 555 aaPredicted RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 COL4A3Q01955 1670 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 CCDC187A0A096LP49 1063 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 SMIM31A0A1B0GVY4 71 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 ELOA3DA6NLF2 546 aaPredicted RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 PRKRAO75569 313 aaKnown RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 ZFAND5O76080 213 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 NUDT7P0C024 238 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 SLC5A2P31639 672 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 IDH2P48735 452 aaKnown RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 PSMD7P51665 324 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 TARDBPQ13148 414 aaKnown RBP eCLIP7.82□□□□□ -1.16
USP54-215ENST00000497106 GANABQ14697 944 aaKnown RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 ELOA3BQ3SY89 546 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 PEAR1Q5VY43 1037 aaPredicted RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 HSDL2Q6YN16 418 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 VTCN1Q7Z7D3 282 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 CADM2Q8N3J6 435 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 ELOA3Q8NG57 546 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 OR5T3Q8NGG3 340 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 OR52J3Q8NH60 311 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 LCORQ96JN0 433 aaPredicted RBP7.82□□□□□ -1.16
USP54-215ENST00000497106 IP6K3Q96PC2 410 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 NUDT22Q9BRQ3 303 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 GABARAPL1Q9H0R8 117 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 UBQLN4Q9NRR5 601 aa7.82□□□□□ -1.16
USP54-215ENST00000497106 LOC100130705A0A1B0GUX0 176 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 MAN1A2O60476 641 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 LRP3O75074 770 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 ATP6V1G1O75348 118 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 TFPTP0C1Z6 253 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 ITGAMP11215 1152 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 NOS3P29474 1203 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 LSSP48449 732 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 ATP12AP54707 1039 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 LTB4RQ15722 352 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 SYPL1Q16563 259 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 EXOC3L2Q2M3D2 409 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 RPS26P11Q5JNZ5 115 aaPredicted RBP7.81□□□□□ -1.16
USP54-215ENST00000497106 PTCHD4Q6ZW05 846 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 MMP21Q8N119 569 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 SLC43A2Q8N370 569 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 DNAJA4Q8WW22 397 aaPredicted RBP7.81□□□□□ -1.16
USP54-215ENST00000497106 RFKQ969G6 155 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 TAMM41Q96BW9 452 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 NECAB3Q96P71 396 aaPredicted RBP7.81□□□□□ -1.16
USP54-215ENST00000497106 ULBP3Q9BZM4 244 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 FAM60AQ9NP50 221 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 SERINC1Q9NRX5 453 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 TBC1D23Q9NUY8 699 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 DHCR7Q9UBM7 475 aaKnown RBP7.81□□□□□ -1.16
USP54-215ENST00000497106 CES1P1Q9UKY3 287 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 ATXN7L1Q9ULK2 861 aaPredicted RBP7.81□□□□□ -1.16
USP54-215ENST00000497106 ARRDC5A6NEK1 342 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 LYNP07948 512 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 LINGO3P0C6S8 592 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 GP1BBP13224 206 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 SMSP52788 366 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 HYAL2Q12891 473 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 KEAP1Q14145 624 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 CEBPEQ15744 281 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 FAM111BQ6SJ93 734 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 SLC34A3Q8N130 599 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 AQP11Q8NBQ7 271 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 OR7G2Q8NG99 324 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 WDR36Q8NI36 951 aaKnown RBP7.81□□□□□ -1.16
USP54-215ENST00000497106 FLVCR1-AS1Q8TAF5 88 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 OSTF1Q92882 214 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 FBXL20Q96IG2 436 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 TAAR9Q96RI9 348 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 CSF3RQ99062 836 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 IKZF5Q9H5V7 419 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 KCMF1Q9P0J7 381 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 BAIAP2Q9UQB8 552 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 B4E171 279 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 JRKO75564 520 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 TSPAN7P41732 249 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 STAT5AP42229 794 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 YAP1P46937 504 aaKnown RBP7.81□□□□□ -1.16
USP54-215ENST00000497106 KCNAB1Q14722 419 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 EXOSC7Q15024 291 aaKnown RBP7.81□□□□□ -1.16
USP54-215ENST00000497106 KCTD21Q4G0X4 260 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 NAXDQ8IW45 347 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 DND1Q8IYX4 353 aaKnown RBP7.81□□□□□ -1.16
USP54-215ENST00000497106 ZBTB44Q8NCP5 570 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 LSM14AQ8ND56 463 aaKnown RBP7.81□□□□□ -1.16
USP54-215ENST00000497106 PHOSPHO1Q8TCT1 267 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 ANKRD60Q9BZ19 345 aa7.81□□□□□ -1.16
USP54-215ENST00000497106 SIRT3Q9NTG7 399 aaPredicted RBP7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms