RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 AFMIDQ63HM1 303 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 SFRP4Q6FHJ7 346 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 HAGHLQ6PII5 290 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 LRRN1Q6UXK5 716 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 NRROSQ86YC3 692 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 TCF7L1Q9HCS4 588 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 SLC39A1Q9NY26 324 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 GDE1Q9NZC3 331 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 A0A075B6Q4 140 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 KANTRA0A1W2PQU2 76 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 PROM1O43490 865 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 ZNF821O75541 412 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 APEX1P27695 318 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 PSMB5P28074 263 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 VEZF1Q14119 521 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 FRMPD2BQ6IN97 320 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 DLEU7Q6UYE1 221 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 OR52N2Q8NGI0 321 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 NXPE2Q96DL1 559 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 ZC3H10Q96K80 434 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 TPSD1Q9BZJ3 242 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 CLMPQ9H6B4 373 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 WWP2O00308 870 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 UGDHO60701 494 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 HPGDSO60760 199 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 ARL6IP5O75915 188 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 UBXN7O94888 489 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 ADAP00813 363 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 SPNP16150 400 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 IGFALSP35858 605 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 OR4C11Q6IEV9 310 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 CBLL1Q75N03 491 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 ANKRD33Q7Z3H0 272 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 MKKSQ9NPJ1 570 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 PAHP00439 452 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 SERPINA3P01011 423 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 MTNR1AP48039 350 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 CDK3Q00526 305 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ATXN7L3Q14CW9 347 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 SF3A2Q15428 464 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ZNF782Q6ZMW2 699 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 LIMS2Q7Z4I7 341 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 LINC00471Q8N535 108 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 OR52E4Q8NGH9 312 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 CPPED1Q9BRF8 314 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 DMRT3Q9NQL9 472 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 C1orf105O95561 183 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 BMP1P13497 986 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 OSMP13725 252 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 GJA4P35212 333 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 DHPSP49366 369 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 PRLHRP49683 370 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 METTL2BQ6P1Q9 378 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ELMOD3Q96FG2 381 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 TREM1Q9NP99 234 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ELOA3DA6NLF2 546 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 RFXAPO00287 272 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 CACNG3O60359 315 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ARHGEF15O94989 841 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 CFIP05156 583 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 AK4P27144 223 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 WNT4P56705 351 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ENPP2Q13822 863 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ELOA3BQ3SY89 546 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 RPS26P11Q5JNZ5 115 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 SLC9B2Q86UD5 537 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 BEST4Q8NFU0 473 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ELOA3Q8NG57 546 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 TM9SF2Q99805 663 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 OR8D2Q9GZM6 311 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 Q9N2J8 555 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 KLHL42Q9P2K6 505 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ASB1Q9Y576 335 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ANXA2P2A6NMY6 339 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ANXA2P07355 339 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 TANGO2Q6ICL3 276 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 RAB12Q6IQ22 244 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 CEACAM19Q7Z692 300 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 NLGN4XQ8N0W4 816 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 ZNF740Q8NDX6 193 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 SLC25A36Q96CQ1 311 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 MMABQ96EY8 250 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 HRASLS5Q96KN8 279 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 SLC35C2Q9NQQ7 365 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 PCDHGA2Q9Y5H1 932 aa15.41■□□□□ 0.06
CCDC88B-209ENST00000494080 LRRC37AA6NMS7 1700 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 GFRA2O00451 464 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 GPR37L1O60883 481 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 NUDT7P0C024 238 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 GBX2P52951 348 aaPredicted RBP15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 CLPPQ16740 277 aaPredicted RBP15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 UGT3A2Q3SY77 523 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 WASH2PQ6VEQ5 465 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 USP51Q70EK9 711 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 PKMYT1Q99640 499 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 PPA2Q9H2U2 334 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 OR51J1Q9H342 316 aa15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 CNOT2Q9NZN8 540 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-209ENST00000494080 C1orf226A1L170 272 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms