RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 PLXDC2Q6UX71 529 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 RNF165Q6ZSG1 346 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 OR2L13Q8N349 312 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 ABTB1Q969K4 478 aaPredicted RBP12.82□□□□□ -0.36
UPF3A-204ENST00000475218 EFHD2Q96C19 240 aaPredicted RBP12.82□□□□□ -0.36
UPF3A-204ENST00000475218 APOPT1Q96IL0 206 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 MECRQ9BV79 373 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 GIMAP4Q9NUV9 329 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 LGALS13Q9UHV8 139 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 CAMK2AQ9UQM7 478 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 DNAJC15Q9Y5T4 150 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 WIF1Q9Y5W5 379 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 ANKHD1Q8IWZ3 2542 aaKnown RBP12.82□□□□□ -0.36
UPF3A-204ENST00000475218 MBD3L4A6NDZ8 208 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 MBD3L3A6NE82 208 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 MBD3L5A6NJ08 208 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 CD8B2A6NJW9 211 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 AZIN1O14977 448 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 CYP4B1P13584 511 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 SDC1P18827 310 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 PNLIPRP2P54317 469 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 RFTN2Q52LD8 501 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 LARP4Q71RC2 724 aaKnown RBP eCLIP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 ZNF551Q7Z340 670 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 ADGRE4PQ86SQ3 457 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 PLCZ1Q86YW0 608 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 LACC1Q8IV20 430 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 CCDC63Q8NA47 563 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 C9orf106Q8NAJ2 232 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 MBD3L2Q8NHZ7 208 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 AENQ8WTP8 325 aaKnown RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 ELP4Q96EB1 424 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 STMN4Q9H169 189 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 TAS2R9Q9NYW1 312 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 KCNN3Q9UGI6 736 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 PRDM4Q9UKN5 801 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 F8P00451 2351 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 TLDC2A0PJX2 215 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 HSPB2A8KAH6 182 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 LSM1O15116 133 aaKnown RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 FADS1O60427 444 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 ZIC3O60481 467 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 TRIM13O60858 407 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 ABCB7O75027 752 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 SEC22BO75396 215 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 CBR3O75828 277 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 CPN1P15169 458 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 BMP5P22003 454 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 MAP3K8P41279 467 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 B3GALT5-AS1P59052 145 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 ZNF155Q12901 538 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 GAB1Q13480 694 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 HSPB2Q16082 182 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 CES4AQ5XG92 561 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 IKBIPQ70UQ0 350 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 PM20D2Q8IYS1 436 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 HOXB13Q92826 284 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 GFM2Q969S9 779 aaKnown RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 CIDECQ96AQ7 238 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 TMCO6Q96DC7 493 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 METTL2AQ96IZ6 378 aaKnown RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 TRIB1Q96RU8 372 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 TUBA1CQ9BQE3 449 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 LRTM1Q9HBL6 345 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 MIEF1Q9NQG6 463 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 C1orf109Q9NX04 203 aa12.81□□□□□ -0.36
UPF3A-204ENST00000475218 WBP11Q9Y2W2 641 aaKnown RBP12.81□□□□□ -0.36
UPF3A-204ENST00000475218 FAM47E-STBD1D6RA91 191 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 SYT5O00445 386 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 CRCPO75575 148 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 ACTL6AO96019 429 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 IGKV1D-16P01601 117 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 LINC00032P0C843 101 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 CAPN3P20807 821 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 GRK2P25098 689 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 STARP49675 285 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 LHX2P50458 406 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 PDE7AQ13946 482 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 FBXL19-AS1Q494R0 122 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 TRIM42Q8IWZ5 723 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 CLYBLQ8N0X4 340 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 FADS6Q8N9I5 356 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 OR6Y1Q8NGX8 325 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 NRGNQ92686 78 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 ZNF764Q96H86 408 aaPredicted RBP12.8□□□□□ -0.36
UPF3A-204ENST00000475218 FAM111AQ96PZ2 611 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 LMF2Q9BU23 707 aaKnown RBP12.8□□□□□ -0.36
UPF3A-204ENST00000475218 GIMAP2Q9UG22 337 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 BAIAP2L1Q9UHR4 511 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 FIS1Q9Y3D6 152 aa12.8□□□□□ -0.36
UPF3A-204ENST00000475218 SLC28A1O00337 649 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 COQ9O75208 318 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 SPAG7O75391 227 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 SLITRK5O94991 958 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 FGF4P08620 206 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 IL12BP29460 328 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 SRD5A2P31213 254 aa12.79□□□□□ -0.36
UPF3A-204ENST00000475218 FRKP42685 505 aaPredicted RBP12.79□□□□□ -0.36
UPF3A-204ENST00000475218 AGFG1P52594 562 aaKnown RBP12.79□□□□□ -0.36
UPF3A-204ENST00000475218 CLDN18P56856 261 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms