RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 NXF5Q9H1B4 397 aaKnown RBP16.29■□□□□ 0.2
COL7A1-205ENST00000465238 FOLH1BQ9HBA9 442 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 TIMMDC1Q9NPL8 285 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 SDR39U1Q9NRG7 319 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-205ENST00000465238 ZIM2Q9NZV7 527 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 SNX8Q9Y5X2 465 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 CCDC168Q8NDH2 2452 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 PRSS51A0A1B0GVH4 220 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 CAPN14A8MX76 684 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 RNASET2O00584 256 aaKnown RBP16.28■□□□□ 0.2
COL7A1-205ENST00000465238 ADAM10O14672 748 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 EMC8O43402 210 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 ZNF354AO60765 605 aaPredicted RBP16.28■□□□□ 0.2
COL7A1-205ENST00000465238 ERN1O75460 977 aaKnown RBP16.28■□□□□ 0.2
COL7A1-205ENST00000465238 ABCB1P08183 1280 aaPredicted RBP16.28■□□□□ 0.2
COL7A1-205ENST00000465238 PTGS2P35354 604 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 PRKAG1P54619 331 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 PRR5P85299 388 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 ZNF155Q12901 538 aaPredicted RBP16.28■□□□□ 0.2
COL7A1-205ENST00000465238 NNATQ16517 81 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 FAM174BQ3ZCQ3 159 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 SPDYE7PQ495Y7 208 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 SPANXN4Q5MJ08 99 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 RTL4Q6ZR62 310 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 NCCRP1Q6ZVX7 275 aaPredicted RBP16.28■□□□□ 0.2
COL7A1-205ENST00000465238 MDGA2Q7Z553 956 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 DND1Q8IYX4 353 aaKnown RBP16.28■□□□□ 0.2
COL7A1-205ENST00000465238 NUP43Q8NFH3 380 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 FAM57AQ8TBR7 257 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 SGCZQ96LD1 299 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 LURAP1Q96LR2 239 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 NEUROD4Q9HD90 331 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 GPR55Q9Y2T6 319 aaPredicted RBP16.28■□□□□ 0.2
COL7A1-205ENST00000465238 NPFFR2Q9Y5X5 522 aa16.28■□□□□ 0.2
COL7A1-205ENST00000465238 A0A1B0GTH9 108 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 C19orf84I3L1E1 186 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 ACOX3O15254 700 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 HS6ST1O60243 411 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 NME6O75414 186 aaPredicted RBP16.27■□□□□ 0.2
COL7A1-205ENST00000465238 IL12AP29459 219 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 SSTR2P30874 369 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 RFC3P40938 356 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 TMED10P49755 219 aaKnown RBP16.27■□□□□ 0.2
COL7A1-205ENST00000465238 DGKQP52824 942 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 WNT3P56703 355 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 ZNHIT3Q15649 155 aaPredicted RBP16.27■□□□□ 0.2
COL7A1-205ENST00000465238 CMPK2Q5EBM0 449 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 TMEM64Q6YI46 380 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 C3P1Q6ZMU1 363 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 SPACA9Q96E40 222 aaPredicted RBP16.27■□□□□ 0.2
COL7A1-205ENST00000465238 VSTM2LQ96N03 204 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 ZCCHC3Q9NUD5 404 aaKnown RBP16.27■□□□□ 0.2
COL7A1-205ENST00000465238 FAM120CQ9NX05 1096 aaKnown RBP16.27■□□□□ 0.2
COL7A1-205ENST00000465238 COQ3Q9NZJ6 369 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 TRIM33Q9UPN9 1127 aa16.27■□□□□ 0.2
COL7A1-205ENST00000465238 ZNF407Q9C0G0 2248 aa16.27■□□□□ 0.19
COL7A1-205ENST00000465238 FRG2CA6NGY1 282 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 TTC36A6NLP5 189 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 C9JVG2 144 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 PSMG1O95456 288 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 CPSF4O95639 269 aaKnown RBP16.26■□□□□ 0.19
COL7A1-205ENST00000465238 IL6P05231 212 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 PGRP06401 933 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 TPOP07202 933 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 FBXO45P0C2W1 286 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 NCF2P19878 526 aaPredicted RBP16.26■□□□□ 0.19
COL7A1-205ENST00000465238 SOAT1P35610 550 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 CCT3P49368 545 aaKnown RBP16.26■□□□□ 0.19
COL7A1-205ENST00000465238 ARFIP2P53365 341 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 GPR85P60893 370 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 HBA1P69905 142 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 PSPHP78330 225 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 PHC1P78364 1004 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 IRX1P78414 480 aaPredicted RBP16.26■□□□□ 0.19
COL7A1-205ENST00000465238 ZNF791Q3KP31 576 aaPredicted RBP16.26■□□□□ 0.19
COL7A1-205ENST00000465238 ARHGAP11AQ6P4F7 1023 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 PAOXQ6QHF9 649 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 LYPD8Q6UX82 237 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 ANKRD46Q86W74 232 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 SLC44A2Q8IWA5 706 aaPredicted RBP16.26■□□□□ 0.19
COL7A1-205ENST00000465238 PRR22Q8IZ63 422 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 CLECL1Q8IZS7 167 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 ZNF295-AS1Q8N0V1 137 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 GOLM1Q8NBJ4 401 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 PSD4Q8NDX1 1056 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 FAM13CQ8NE31 585 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 OR4A15Q8NGL6 344 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 PSMA8Q8TAA3 256 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 CA5BP1Q8WTZ4 195 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 MOAP1Q96BY2 351 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 SDCCAG3Q96C92 435 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 FAM120BQ96EK7 910 aaKnown RBP16.26■□□□□ 0.19
COL7A1-205ENST00000465238 MS4A4EQ96PG1 132 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 BTBD9Q96Q07 612 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 OR52E6Q96RD3 313 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 SPOCK3Q9BQ16 436 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 TMEM120AQ9BXJ8 343 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 CXorf36Q9H7Y0 433 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 EQTNQ9NQ60 294 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 PLSCR2Q9NRY7 297 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms