RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 DDX31Q9H8H2 851 aaKnown RBP11.02□□□□□ -0.65
CPSF3-202ENST00000460593 VWA8A3KMH1 1905 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 ARRDC5A6NEK1 342 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF593O00488 134 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-202ENST00000460593 PITPNBP48739 271 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 BLVRAP53004 296 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 C21orf58P58505 322 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 GSG1Q2KHT4 349 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 ARL9Q6T311 187 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 PRICKLE2Q7Z3G6 844 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 OR5M3Q8NGP4 307 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 OR2T4Q8NH00 348 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 ELMOD3Q96FG2 381 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 FERD3LQ96RJ6 166 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 TP53BP1Q12888 1972 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-202ENST00000460593 CASP8AP2Q9UKL3 1982 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF840PA6NDX5 716 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 E9PI62 339 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 TSPAN6O43657 245 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 GNSP15586 552 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 CXCL2P19875 107 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 CFL1P23528 166 aaKnown RBP11.01□□□□□ -0.65
CPSF3-202ENST00000460593 HOXC8P31273 242 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 BUD31P41223 144 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-202ENST00000460593 CTSCP53634 463 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 PRKAG1P54619 331 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 RPS7P62081 194 aaKnown RBP11.01□□□□□ -0.65
CPSF3-202ENST00000460593 OC90Q02509 493 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-202ENST00000460593 RAB40BQ12829 278 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 OPCMLQ14982 345 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 FAAP20Q6NZ36 180 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 MED27Q6P2C8 311 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 RPTNQ6XPR3 784 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 SLC36A4Q6YBV0 504 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 SIRT6Q8N6T7 355 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 NLGN2Q8NFZ4 835 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 TRMT10AQ8TBZ6 339 aaKnown RBP11.01□□□□□ -0.65
CPSF3-202ENST00000460593 THAP4Q8WY91 577 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 EXOSC8Q96B26 276 aaKnown RBP11.01□□□□□ -0.65
CPSF3-202ENST00000460593 SCRN2Q96FV2 425 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 UROC1Q96N76 676 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 PARK7Q99497 189 aaKnown RBP11.01□□□□□ -0.65
CPSF3-202ENST00000460593 SARGQ9BW04 601 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-202ENST00000460593 CYSLTR2Q9NS75 346 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 TRPC4Q9UBN4 977 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 HRH3Q9Y5N1 445 aa11.01□□□□□ -0.65
CPSF3-202ENST00000460593 MEIKINA0A087WXM9 373 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 GLTPD2A6NH11 291 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SLC9B1P1A6NJY1 282 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 BET1O15155 118 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 STATHP02808 62 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 H2AFB2P0C5Z0 115 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 ACP5P13686 325 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SNRPBP14678 240 aaKnown RBP11□□□□□ -0.65
CPSF3-202ENST00000460593 LCN1P31025 176 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 MANFP55145 182 aaKnown RBP11□□□□□ -0.65
CPSF3-202ENST00000460593 CDK5Q00535 292 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 TAP2Q03519 686 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SLC3A1Q07837 685 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 CNTN1Q12860 1018 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 PLD1Q13393 1074 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 FZD5Q13467 585 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 TMEM255AQ5JRV8 349 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 TCTE1Q5JU00 501 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 HECTD3Q5T447 861 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 LYPLAL1Q5VWZ2 237 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 RNLSQ5VYX0 342 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 CD276Q5ZPR3 534 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 FAM71E1Q6IPT2 247 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 FBXO15Q8NCQ5 510 aaPredicted RBP11□□□□□ -0.65
CPSF3-202ENST00000460593 MOSPD2Q8NHP6 518 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 PDXPQ96GD0 296 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SEC22CQ9BRL7 303 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 OR10A4Q9H209 315 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 ADAM30Q9UKF2 790 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SYNDIG1LA6NDD5 238 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 HMGN4O00479 90 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 PI15O43692 258 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SLC19A2O60779 497 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SOX30O94993 753 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 EPPINO95925 133 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 THBS2P35442 1172 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 ERVFC1P60507 584 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 ERVK-21P61565 698 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 AP1S1P61966 158 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 CTAG1AP78358 180 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 E2F1Q01094 437 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 FGL2Q14314 439 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SLCO4C1Q6ZQN7 724 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SGTBQ96EQ0 304 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 TREX2Q9BQ50 279 aaPredicted RBP11□□□□□ -0.65
CPSF3-202ENST00000460593 GSDMCQ9BYG8 508 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 ZDHHC6Q9H6R6 413 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 FGF20Q9NP95 211 aaPredicted RBP11□□□□□ -0.65
CPSF3-202ENST00000460593 CA10Q9NS85 328 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 OR51B4Q9Y5P0 310 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 LINC01387J3KSC0 135 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SYN3O14994 580 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 GMDSO60547 372 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms