RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 BBS10Q8TAM1 723 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 LZICQ8WZA0 190 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 CDS1Q92903 461 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 RAB8BQ92930 207 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 FAM162AQ96A26 154 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 GIMAP5Q96F15 307 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 TRNT1Q96Q11 434 aaKnown RBP9.35□□□□□ -0.91
CD44-207ENST00000425428 CDCP1Q9H5V8 836 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 A4GALTQ9NPC4 353 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 SLC6A13Q9NSD5 602 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 STMN3Q9NZ72 180 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 ABCD2Q9UBJ2 740 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 RAXQ9Y2V3 346 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 WDR45Q9Y484 360 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 DOCK10Q96BY6 2186 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 A0A0G2JPF8 293 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 MED19A0JLT2 244 aaPredicted RBP9.35□□□□□ -0.91
CD44-207ENST00000425428 PRORSD1PA6NEY8 169 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 CFAP73A6NFT4 308 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 A8MVJ9 347 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 HNRNPCL2B2RXH8 293 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 HNRNPCL3B7ZW38 293 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 FXYD1O00168 92 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 HMGN4O00479 90 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 GSC2O15499 205 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 ITGA10O75578 1167 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 HNRNPCL4P0DMR1 293 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 ITGAMP11215 1152 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 HSD17B1P14061 328 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 PIGAP37287 484 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 OC90Q02509 493 aaPredicted RBP9.35□□□□□ -0.91
CD44-207ENST00000425428 VEZF1Q14119 521 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 NNATQ16517 81 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 DUSP5Q16690 384 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 VMACQ2NL98 169 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 COX20Q5RI15 118 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 DCST2Q5T1A1 773 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 TCTN3Q6NUS6 607 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 BORAQ6PGQ7 559 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 LRRC74BQ6ZQY2 392 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 MSRB3Q8IXL7 192 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 MICU2Q8IYU8 434 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 KIF2BQ8N4N8 673 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 SIRT6Q8N6T7 355 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 ZNF321PQ8N8H1 164 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 BRIX1Q8TDN6 353 aaKnown RBP9.35□□□□□ -0.91
CD44-207ENST00000425428 ADIPOR1Q96A54 375 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 SLC7A6OSQ96CW6 309 aaPredicted RBP9.35□□□□□ -0.91
CD44-207ENST00000425428 SLC35A4Q96G79 324 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 ARHGAP9Q9BRR9 750 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 MTHFD2LQ9H903 347 aaPredicted RBP9.35□□□□□ -0.91
CD44-207ENST00000425428 HPF1Q9NWY4 346 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 ADPRHL2Q9NX46 363 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 GPR83Q9NYM4 423 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 MAGEL2Q9UJ55 1249 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 NPFFR2Q9Y5X5 522 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 A6NL46 340 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 C1QTNF9BB2RNN3 333 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 MKRN2OSH3BPM6 223 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 NME4O00746 187 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 SCDO00767 359 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 TO15178 435 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 OR2J2O76002 312 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 C1QTNF9P0C862 333 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 ACP2P11117 423 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 BMP2P12643 396 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 HOXB9P17482 250 aaPredicted RBP9.34□□□□□ -0.91
CD44-207ENST00000425428 HTR1EP28566 365 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 PCGF2P35227 344 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 CPOXP36551 454 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 GSK3BP49841 420 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 PNLIPRP2P54317 469 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 CORO7P57737 925 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 NCALDP61601 193 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 PSG6Q00889 435 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 TLE3Q04726 772 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 LARS2Q15031 903 aaKnown RBP9.34□□□□□ -0.91
CD44-207ENST00000425428 ZSWIM7Q19AV6 140 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 FLYWCH1Q4VC44 716 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 PIGGQ5H8A4 983 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 C8orf82Q6P1X6 216 aaPredicted RBP9.34□□□□□ -0.91
CD44-207ENST00000425428 ISLR2Q6UXK2 745 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 WDR53Q7Z5U6 358 aaPredicted RBP9.34□□□□□ -0.91
CD44-207ENST00000425428 APLFQ8IW19 511 aaPredicted RBP9.34□□□□□ -0.91
CD44-207ENST00000425428 RNF148Q8N7C7 305 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 FAM13CQ8NE31 585 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 NFKBIDQ8NI38 313 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 OIT3Q8WWZ8 545 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 FIG4Q92562 907 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 PIK3R3Q92569 461 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 OMA1Q96E52 524 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 COL21A1Q96P44 957 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 UTP23Q9BRU9 249 aaKnown RBP9.34□□□□□ -0.91
CD44-207ENST00000425428 TMEM121BQ9BXQ6 578 aaPredicted RBP9.34□□□□□ -0.91
CD44-207ENST00000425428 NXF5Q9H1B4 397 aaKnown RBP9.34□□□□□ -0.91
CD44-207ENST00000425428 SDHAF3Q9NRP4 125 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 CMTM6Q9NX76 183 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 KLHL28Q9NXS3 571 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 RPS6KA6Q9UK32 745 aa9.34□□□□□ -0.91
CD44-207ENST00000425428 IFT52Q9Y366 437 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms