RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 WDR45Q9Y484 360 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 KCNE3Q9Y6H6 103 aa15.91■□□□□ 0.14
CCDC28B-202ENST00000421922 M0QX08 132 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 HNRNPRO43390 633 aaKnown RBP15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 TPST1O60507 370 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 STX11O75558 287 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 ALPPP05187 535 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 CHRM4P08173 479 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 DLSTP36957 453 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 PCBP3P57721 371 aaKnown RBP15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 HEPHL1Q6MZM0 1159 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 MARCH9Q86YJ5 346 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 SPPL2AQ8TCT8 520 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 C8orf44Q96CB5 159 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 VMP1Q96GC9 406 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 HSH2DQ96JZ2 352 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 NUDT9Q9BW91 350 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 BCL2L10Q9HD36 194 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 MRTO4Q9UKD2 239 aaKnown RBP15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 TCFL5Q9UL49 500 aa15.9■□□□□ 0.14
CCDC28B-202ENST00000421922 CACNA1GO43497 2377 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 C2orf92A0A1B0GVN3 265 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 KLF7O75840 302 aaPredicted RBP15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 IGKV3-11P04433 115 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 UMODP07911 640 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 ETS2P15036 469 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 OTX2P32243 289 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 TRHRP34981 398 aaPredicted RBP15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 STAT5AP42229 794 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 FUT5Q11128 374 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 NNATQ16517 81 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 IRAK1BP1Q5VVH5 260 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 FIGNL1Q6PIW4 674 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 HSDL2Q6YN16 418 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 PEX5LQ8IYB4 626 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 IL22RA1Q8N6P7 574 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 ZNF321PQ8N8H1 164 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 CHDHQ8NE62 594 aaPredicted RBP15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 PROX1Q92786 737 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 KIAA1143Q96AT1 154 aaPredicted RBP15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 TAMM41Q96BW9 452 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 G6PC3Q9BUM1 346 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 GPR87Q9BY21 358 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 SPRY4Q9C004 299 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 FAM117AQ9C073 453 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 POLE3Q9NRF9 147 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 ARMC1Q9NVT9 282 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 WDR70Q9NW82 654 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 C6orf203Q9P0P8 240 aaPredicted RBP15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 STOML1Q9UBI4 398 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 DTX4Q9Y2E6 619 aa15.89■□□□□ 0.13
CCDC28B-202ENST00000421922 ZFHX4Q86UP3 3567 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 GXYLT2A0PJZ3 443 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 PRAMEF27A3QJZ7 478 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 CLPSP04118 112 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 MMP11P24347 488 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 KRT20P35900 424 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 PPICP45877 212 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 PSMD4P55036 377 aaKnown RBP15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 SELENOWP63302 87 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 PSG6Q00889 435 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 CHRNEQ04844 493 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 SLC34A1Q06495 639 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 DECR1Q16698 335 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 IFI44LQ53G44 452 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 EXOSC6Q5RKV6 272 aaKnown RBP15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 CCNJQ5T5M9 372 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 PQLC1Q8N2U9 271 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 SMYD1Q8NB12 490 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 HOXB13Q92826 284 aaPredicted RBP15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 LCORQ96JN0 433 aaPredicted RBP15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 BTBD9Q96Q07 612 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 SDF2Q99470 211 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 DOHHQ9BU89 302 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 RUBCNLQ9H714 662 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 THSD1Q9NS62 852 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 KCND3Q9UK17 655 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 CBLCQ9ULV8 474 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 GPC6Q9Y625 555 aaPredicted RBP15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 AK5Q9Y6K8 562 aa15.88■□□□□ 0.13
CCDC28B-202ENST00000421922 CHD8Q9HCK8 2581 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 LOC102723996A0A087X1L8 192 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 TRBV11-1A0A0K0K1C0 115 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 FRG2CA6NGY1 282 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 H3BNX3 289 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 TIPRLO75663 272 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 FASP25445 335 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 MAP3K8P41279 467 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 SLC26A5P58743 744 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 RPS18P62269 152 aaKnown RBP15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 PSPHP78330 225 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 EBPQ15125 230 aaKnown RBP15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 GPR68Q15743 365 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 EXT1Q16394 746 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 FLYWCH1Q4VC44 716 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 FAM69BQ5VUD6 431 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 NPSR1Q6W5P4 371 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 RAB43Q86YS6 212 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 ZNF619Q8N2I2 560 aa15.87■□□□□ 0.13
CCDC28B-202ENST00000421922 OR10Q1Q8NGQ4 319 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms